Warning: Permanently added '169.62.22.186' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6986844-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 0.70
PID: 6304
Logging PID: 6305
Task:
{'appstream': False,
 'background': True,
 'build_id': 6986844,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'cb131446a3ecdb28c60f5cf5989e1837034c5ae7',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:1/seqan',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'seqan',
 'package_version': '1.4.2-54',
 'project_dirname': 'openblas-0.3.23:pr:1',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/jjames',
 'source_json': {},
 'source_type': None,
 'submitter': 'https://src.fedoraproject.org/user/jjames',
 'tags': [],
 'task_id': '6986844-fedora-rawhide-s390x',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:1/seqan /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:1/seqan', '/var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan'...

Running: git checkout cb131446a3ecdb28c60f5cf5989e1837034c5ae7 --

cmd: ['git', 'checkout', 'cb131446a3ecdb28c60f5cf5989e1837034c5ae7', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan
rc: 0
stdout: 
stderr: Note: switching to 'cb131446a3ecdb28c60f5cf5989e1837034c5ae7'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at cb13144 automatic import of seqan

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading seqan-src-1.4.2.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o seqan-src-1.4.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:1/seqan/seqan-src-1.4.2.tar.gz/md5/e7d2c6cf6474b5186c27ec31bd32738a/seqan-src-1.4.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  115M  100  115M    0     0   458M      0 --:--:-- --:--:-- --:--:--  460M
INFO: Reading stdout from command: md5sum seqan-src-1.4.2.tar.gz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1707147948.598533 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1707147948.598533 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan/seqan.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.4
INFO: Mock Version: 5.4
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1707147948.598533/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1707147948.598533/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/5f9448dc2571f6897ab6a160b1488983aef45ecddd9879887cae16523daac031/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/5f9448dc2571f6897ab6a160b1488983aef45ecddd9879887cae16523daac031/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 1.9 MB/s |  20 MB     00:10    
Additional repo http_kojipkgs_fedoraproject_org 223 MB/s |  68 MB     00:00    
fedora                                           26 MB/s |  65 MB     00:02    
Last metadata expiration check: 0:00:05 ago on Mon Feb  5 15:46:46 2024.
Dependencies resolved.
=========================================================================================================
 Package        Arch   Version       Repository                                                      Size
=========================================================================================================
Installing:
 dnf5           s390x  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  564 k
 dnf5-plugins   s390x  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  331 k
Installing dependencies:
 fmt            s390x  10.2.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  129 k
 libdnf5        s390x  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  952 k
 libdnf5-cli    s390x  5.1.11-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  229 k
 sdbus-cpp      s390x  1.4.0-2.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  103 k

Transaction Summary
=========================================================================================================
Install  6 Packages

Total download size: 2.3 M
Installed size: 6.3 M
Downloading Packages:
(1/6): fmt-10.2.1-3.fc40.s390x.rpm              3.9 MB/s | 129 kB     00:00    
(2/6): dnf5-5.1.11-3.fc40.s390x.rpm              13 MB/s | 564 kB     00:00    
(3/6): dnf5-plugins-5.1.11-3.fc40.s390x.rpm     7.7 MB/s | 331 kB     00:00    
(4/6): libdnf5-5.1.11-3.fc40.s390x.rpm           84 MB/s | 952 kB     00:00    
(5/6): libdnf5-cli-5.1.11-3.fc40.s390x.rpm       27 MB/s | 229 kB     00:00    
(6/6): sdbus-cpp-1.4.0-2.fc40.s390x.rpm          13 MB/s | 103 kB     00:00    
--------------------------------------------------------------------------------
Total                                            43 MB/s | 2.3 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-3.fc40.s390x                                1/6 
  Installing       : libdnf5-5.1.11-3.fc40.s390x                            2/6 
  Installing       : libdnf5-cli-5.1.11-3.fc40.s390x                        3/6 
  Installing       : dnf5-5.1.11-3.fc40.s390x                               4/6 
  Installing       : sdbus-cpp-1.4.0-2.fc40.s390x                           5/6 
  Installing       : dnf5-plugins-5.1.11-3.fc40.s390x                       6/6 
  Running scriptlet: dnf5-plugins-5.1.11-3.fc40.s390x                       6/6 

Installed:
  dnf5-5.1.11-3.fc40.s390x               dnf5-plugins-5.1.11-3.fc40.s390x       
  fmt-10.2.1-3.fc40.s390x                libdnf5-5.1.11-3.fc40.s390x            
  libdnf5-cli-5.1.11-3.fc40.s390x        sdbus-cpp-1.4.0-2.fc40.s390x           

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1707147948.598533/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-4.fc40.s390x
  rpm-sequoia-1.6.0-2.fc40.s390x
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-3.fc40.s390x
  dnf5-plugins-5.1.11-3.fc40.s390x
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  12.5 MiB/s |  18.9 MiB |  00m02s
 Copr repository                        100% |  27.7 MiB/s |   3.5 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 119.6 MiB/s |  16.4 MiB |  00m00s
Repositories loaded.
Package                           Arch   Version                    Repository                                                         Size
Installing group/module packages:                                                                                                          
 bash                             s390x  5.2.26-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 MiB
 bzip2                            s390x  1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  99.2 KiB
 coreutils                        s390x  9.4-6.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 MiB
 cpio                             s390x  2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                        s390x  3.10-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common            noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.1 KiB
 findutils                        s390x  1:4.9.0-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 gawk                             s390x  5.3.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 glibc-minimal-langpack           s390x  2.38.9000-39.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                             s390x  3.11-7.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                             s390x  1.13-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 400.8 KiB
 info                             s390x  7.1-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 405.1 KiB
 patch                            s390x  2.7.6-24.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.3 KiB
 redhat-rpm-config                noarch 280-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.2 KiB
 rpm-build                        s390x  4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.2 KiB
 sed                              s390x  4.9-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 873.2 KiB
 shadow-utils                     s390x  2:4.14.0-4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.0 MiB
 tar                              s390x  2:1.35-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                            s390x  6.0-63.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 406.0 KiB
 util-linux                       s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.7 MiB
 which                            s390x  2.21-41.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.9 KiB
 xz                               s390x  5.4.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
Installing dependencies:                                                                                                                   
 alternatives                     s390x  1.26-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.1 KiB
 ansible-srpm-macros              noarch 1-14.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                       s390x  4.0-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.8 KiB
 authselect                       s390x  1.5.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.3 KiB
 authselect-libs                  s390x  1.5.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.2 KiB
 basesystem                       noarch 11-20.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                         s390x  2.41-32.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.9 MiB
 binutils-gold                    s390x  2.41-32.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 bzip2-libs                       s390x  1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.5 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-6.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                 s390x  9.4-6.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.4 MiB
 cracklib                         s390x  2.9.11-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 250.0 KiB
 crypto-policies                  noarch 20240201-1.git9f501f3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB
 curl                             s390x  8.6.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 758.4 KiB
 cyrus-sasl-lib                   s390x  2.1.28-19.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 debugedit                        s390x  5.0-14.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.5 KiB
 dwz                              s390x  0.15-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 318.6 KiB
 ed                               s390x  1.20-2.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 150.2 KiB
 efi-srpm-macros                  noarch 5-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                         s390x  0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 elfutils-debuginfod-client       s390x  0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.4 KiB
 elfutils-default-yama-scope      noarch 0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                  s390x  0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 elfutils-libs                    s390x  0.190-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 738.0 KiB
 fedora-gpg-keys                  noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB
 fedora-release                   noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic    noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                     noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide             noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                             s390x  5.45-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.3 KiB
 file-libs                        s390x  5.45-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                       s390x  3.18-8.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                noarch 1:2.0.5-14.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                noarch 0.2.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 fpc-srpm-macros                  noarch 1.3-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                      s390x  14.1-8.fc40                copr_base                                                      12.5 MiB
 gdbm                             s390x  1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 483.9 KiB
 gdbm-libs                        s390x  1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 133.4 KiB
 ghc-srpm-macros                  noarch 1.6.1-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.0   B
 glibc                            s390x  2.38.9000-39.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.4 MiB
 glibc-common                     s390x  2.38.9000-39.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 glibc-gconv-extra                s390x  2.38.9000-39.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.7 MiB
 gmp                              s390x  1:6.2.1-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 769.2 KiB
 gnat-srpm-macros                 noarch 6-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                   noarch 3.3.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.6 KiB
 jansson                          s390x  2.13.1-9.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  92.1 KiB
 kernel-srpm-macros               noarch 1.0-22.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                    s390x  1.6.3-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.2 KiB
 krb5-libs                        s390x  1.21.2-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 libacl                           s390x  2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  43.8 KiB
 libarchive                       s390x  3.7.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 libattr                          s390x  2.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.3 KiB
 libblkid                         s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 260.9 KiB
 libbrotli                        s390x  1.1.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 925.1 KiB
 libcap                           s390x  2.69-3.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.1 KiB
 libcap-ng                        s390x  0.8.4-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.7 KiB
 libcom_err                       s390x  1.47.0-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.0 KiB
 libcurl                          s390x  8.6.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 820.6 KiB
 libeconf                         s390x  0.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 libevent                         s390x  2.1.12-11.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 938.7 KiB
 libfdisk                         s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 395.1 KiB
 libffi                           s390x  3.4.4-7.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  65.1 KiB
 libgcc                           s390x  14.0.1-0.4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.2 KiB
 libgomp                          s390x  14.0.1-0.4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 529.7 KiB
 libidn2                          s390x  2.3.7-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 332.9 KiB
 libmount                         s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 376.1 KiB
 libnghttp2                       s390x  1.59.0-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.9 KiB
 libnsl2                          s390x  2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  61.7 KiB
 libpkgconf                       s390x  1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  85.8 KiB
 libpsl                           s390x  0.21.5-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.3 KiB
 libpwquality                     s390x  1.4.5-9.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 420.9 KiB
 libselinux                       s390x  3.6-4.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 188.9 KiB
 libsemanage                      s390x  3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 301.3 KiB
 libsepol                         s390x  3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 849.8 KiB
 libsmartcols                     s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.6 KiB
 libssh                           s390x  0.10.6-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 529.1 KiB
 libssh-config                    noarch 0.10.6-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                        s390x  14.0.1-0.4.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 libtasn1                         s390x  4.19.0-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 187.5 KiB
 libtirpc                         s390x  1.3.4-1.rc2.fc40.2         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214.6 KiB
 libunistring                     s390x  1.1-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 libutempter                      s390x  1.2.1-13.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.3 KiB
 libuuid                          s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 libverto                         s390x  0.3.2-8.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.2 KiB
 libxcrypt                        s390x  4.4.36-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.7 KiB
 libxml2                          s390x  2.12.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 libzstd                          s390x  1.5.5-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 867.7 KiB
 lua-libs                         s390x  5.4.6-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 324.8 KiB
 lua-srpm-macros                  noarch 1-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                         s390x  1.9.4-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.2 KiB
 mpfr                             s390x  4.2.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 698.8 KiB
 ncurses-base                     noarch 6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                     s390x  6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 ocaml-srpm-macros                noarch 9-3.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros             noarch 2-16.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.0   B
 openldap                         s390x  2.6.6-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 669.0 KiB
 openssl-libs                     s390x  1:3.1.4-4.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.7 MiB
 p11-kit                          s390x  0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 p11-kit-trust                    s390x  0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 471.2 KiB
 package-notes-srpm-macros        noarch 0.5-11.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                              s390x  1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 pam-libs                         s390x  1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB
 pcre2                            s390x  10.42-2.fc40.2             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 669.3 KiB
 pcre2-syntax                     noarch 10.42-2.fc40.2             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB
 perl-srpm-macros                 noarch 1-53.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                          s390x  1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.6 KiB
 pkgconf-m4                       noarch 1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config               s390x  1.9.5-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 988.0   B
 popt                             s390x  1.19-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.6 KiB
 publicsuffix-list-dafsa          noarch 20240107-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros               noarch 3.12-7.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.1 KiB
 qt5-srpm-macros                  noarch 5.15.12-3.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                  noarch 6.6.1-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                         s390x  8.2-8.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 556.8 KiB
 rpm                              s390x  4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rpm-build-libs                   s390x  4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.2 KiB
 rpm-libs                         s390x  4.19.1-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 809.5 KiB
 rpm-sequoia                      s390x  1.6.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rust-srpm-macros                 noarch 25.2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 KiB
 setup                            noarch 2.14.5-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB
 sqlite-libs                      s390x  3.45.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 systemd-libs                     s390x  255.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 util-linux-core                  s390x  2.40-0.1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 xxhash-libs                      s390x  0.8.2-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.0 KiB
 xz-libs                          s390x  5.4.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 225.6 KiB
 zig-srpm-macros                  noarch 1-2.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                              s390x  3.0-40.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 754.2 KiB
 zlib-ng-compat                   s390x  2.1.6-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.4 KiB
 zstd                             s390x  1.5.5-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
Installing groups:                                                                                                                         
 Buildsystem building group                                                                                                                

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation 180 MiB will be used (install 180 MiB, remove 0 B).
[  1/152] bzip2-0:1.0.8-18.fc40.s390x   100% |   1.2 MiB/s |  53.1 KiB |  00m00s
[  2/152] coreutils-0:9.4-6.fc40.s390x  100% |  24.9 MiB/s |   1.2 MiB |  00m00s
[  3/152] cpio-0:2.15-1.fc40.s390x      100% |  21.8 MiB/s | 290.6 KiB |  00m00s
[  4/152] bash-0:5.2.26-2.fc40.s390x    100% |  32.2 MiB/s |   1.8 MiB |  00m00s
[  5/152] diffutils-0:3.10-5.fc40.s390x 100% |  40.2 MiB/s | 412.0 KiB |  00m00s
[  6/152] fedora-release-common-0:40-0. 100% |   5.0 MiB/s |  20.5 KiB |  00m00s
[  7/152] glibc-minimal-langpack-0:2.38 100% |  11.9 MiB/s |  97.5 KiB |  00m00s
[  8/152] findutils-1:4.9.0-8.fc40.s390 100% |  34.4 MiB/s | 492.6 KiB |  00m00s
[  9/152] gawk-0:5.3.0-3.fc40.s390x     100% |  77.9 MiB/s |   1.1 MiB |  00m00s
[ 10/152] info-0:7.1-2.fc40.s390x       100% |  31.7 MiB/s | 194.6 KiB |  00m00s
[ 11/152] grep-0:3.11-7.fc40.s390x      100% |  24.2 MiB/s | 296.8 KiB |  00m00s
[ 12/152] gzip-0:1.13-1.fc40.s390x      100% |  18.6 MiB/s | 171.2 KiB |  00m00s
[ 13/152] redhat-rpm-config-0:280-1.fc4 100% |  14.7 MiB/s |  75.2 KiB |  00m00s
[ 14/152] rpm-build-0:4.19.1-4.fc40.s39 100% |  11.6 MiB/s |  71.1 KiB |  00m00s
[ 15/152] patch-0:2.7.6-24.fc40.s390x   100% |  15.3 MiB/s | 140.7 KiB |  00m00s
[ 16/152] sed-0:4.9-1.fc40.s390x        100% |  27.7 MiB/s | 311.7 KiB |  00m00s
[ 17/152] tar-2:1.35-3.fc40.s390x       100% |  77.3 MiB/s | 870.7 KiB |  00m00s
[ 18/152] shadow-utils-2:4.14.0-4.fc40. 100% |  80.3 MiB/s |   1.2 MiB |  00m00s
[ 19/152] unzip-0:6.0-63.fc40.s390x     100% |  21.2 MiB/s | 195.4 KiB |  00m00s
[ 20/152] util-linux-0:2.40-0.1.fc40.s3 100% | 113.9 MiB/s |   1.1 MiB |  00m00s
[ 21/152] which-0:2.21-41.fc40.s390x    100% |   5.2 MiB/s |  43.0 KiB |  00m00s
[ 22/152] libblkid-0:2.40-0.1.fc40.s390 100% |  17.1 MiB/s | 122.7 KiB |  00m00s
[ 23/152] libfdisk-0:2.40-0.1.fc40.s390 100% |  23.2 MiB/s | 166.5 KiB |  00m00s
[ 24/152] xz-0:5.4.6-1.fc40.s390x       100% |  43.3 MiB/s | 532.6 KiB |  00m00s
[ 25/152] libsmartcols-0:2.40-0.1.fc40. 100% |  16.9 MiB/s |  86.4 KiB |  00m00s
[ 26/152] libuuid-0:2.40-0.1.fc40.s390x 100% |   5.7 MiB/s |  29.1 KiB |  00m00s
[ 27/152] libmount-0:2.40-0.1.fc40.s390 100% |  22.3 MiB/s | 159.9 KiB |  00m00s
[ 28/152] xz-libs-0:5.4.6-1.fc40.s390x  100% |  16.1 MiB/s | 115.6 KiB |  00m00s
[ 29/152] util-linux-core-0:2.40-0.1.fc 100% |  49.6 MiB/s | 507.8 KiB |  00m00s
[ 30/152] glibc-0:2.38.9000-39.fc40.s39 100% | 118.4 MiB/s |   1.9 MiB |  00m00s
[ 31/152] libselinux-0:3.6-4.fc40.s390x 100% |  11.2 MiB/s |  92.1 KiB |  00m00s
[ 32/152] libxcrypt-0:4.4.36-5.fc40.s39 100% |  15.1 MiB/s | 123.8 KiB |  00m00s
[ 33/152] ncurses-libs-0:6.4-12.2024012 100% |  44.3 MiB/s | 362.7 KiB |  00m00s
[ 34/152] audit-libs-0:4.0-7.fc40.s390x 100% |  13.6 MiB/s | 125.2 KiB |  00m00s
[ 35/152] authselect-libs-0:1.5.0-3.fc4 100% |  32.6 MiB/s | 233.3 KiB |  00m00s
[ 36/152] libcap-ng-0:0.8.4-4.fc40.s390 100% |   4.0 MiB/s |  32.9 KiB |  00m00s
[ 37/152] libutempter-0:1.2.1-13.fc40.s 100% |   5.1 MiB/s |  26.2 KiB |  00m00s
[ 38/152] pam-0:1.6.0-1.fc40.s390x      100% |  51.2 MiB/s | 524.6 KiB |  00m00s
[ 39/152] systemd-libs-0:255.3-1.fc40.s 100% |  23.5 MiB/s | 721.7 KiB |  00m00s
[ 40/152] zlib-ng-compat-0:2.1.6-2.fc40 100% |   8.1 MiB/s |  66.3 KiB |  00m00s
[ 41/152] pam-libs-0:1.6.0-1.fc40.s390x 100% |   3.1 MiB/s |  58.0 KiB |  00m00s
[ 42/152] readline-0:8.2-8.fc40.s390x   100% |  20.4 MiB/s | 230.1 KiB |  00m00s
[ 43/152] libacl-0:2.3.2-1.fc40.s390x   100% |   3.5 MiB/s |  25.4 KiB |  00m00s
[ 44/152] libcap-0:2.69-3.fc40.s390x    100% |   8.3 MiB/s |  84.7 KiB |  00m00s
[ 45/152] bzip2-libs-0:1.0.8-18.fc40.s3 100% |   3.2 MiB/s |  46.6 KiB |  00m00s
[ 46/152] libzstd-0:1.5.5-5.fc40.s390x  100% |  47.9 MiB/s | 343.1 KiB |  00m00s
[ 47/152] lz4-libs-0:1.9.4-6.fc40.s390x 100% |   7.4 MiB/s |  83.2 KiB |  00m00s
[ 48/152] libattr-0:2.5.2-3.fc40.s390x  100% |   2.2 MiB/s |  18.4 KiB |  00m00s
[ 49/152] libeconf-0:0.5.2-3.fc40.s390x 100% |   4.5 MiB/s |  32.2 KiB |  00m00s
[ 50/152] setup-0:2.14.5-2.fc40.noarch  100% |  36.2 MiB/s | 148.1 KiB |  00m00s
[ 51/152] libsemanage-0:3.6-3.fc40.s390 100% |  14.6 MiB/s | 119.7 KiB |  00m00s
[ 52/152] debugedit-0:5.0-14.fc40.s390x 100% |   8.9 MiB/s |  81.7 KiB |  00m00s
[ 53/152] libgcc-0:14.0.1-0.4.fc40.s390 100% |   1.9 MiB/s |  70.5 KiB |  00m00s
[ 54/152] elfutils-libelf-0:0.190-6.fc4 100% |  27.9 MiB/s | 200.1 KiB |  00m00s
[ 55/152] elfutils-0:0.190-6.fc40.s390x 100% |  62.4 MiB/s | 574.9 KiB |  00m00s
[ 56/152] pkgconf-pkg-config-0:1.9.5-4. 100% | 863.8 KiB/s |   9.5 KiB |  00m00s
[ 57/152] file-0:5.45-3.fc40.s390x      100% |   3.7 MiB/s |  49.0 KiB |  00m00s
[ 58/152] binutils-0:2.41-32.fc40.s390x 100% | 148.5 MiB/s |   5.9 MiB |  00m00s
[ 59/152] rpm-0:4.19.1-4.fc40.s390x     100% |  55.2 MiB/s | 509.2 KiB |  00m00s
[ 60/152] popt-0:1.19-6.fc40.s390x      100% |   5.5 MiB/s |  62.4 KiB |  00m00s
[ 61/152] rpm-build-libs-0:4.19.1-4.fc4 100% |  15.8 MiB/s |  97.2 KiB |  00m00s
[ 62/152] zstd-0:1.5.5-5.fc40.s390x     100% |  62.4 MiB/s | 510.8 KiB |  00m00s
[ 63/152] libarchive-0:3.7.2-3.fc40.s39 100% |  48.0 MiB/s | 442.3 KiB |  00m00s
[ 64/152] rpm-libs-0:4.19.1-4.fc40.s390 100% |  19.8 MiB/s | 325.0 KiB |  00m00s
[ 65/152] ansible-srpm-macros-0:1-14.fc 100% |   4.1 MiB/s |  20.8 KiB |  00m00s
[ 66/152] glibc-gconv-extra-0:2.38.9000 100% | 119.0 MiB/s |   1.7 MiB |  00m00s
[ 67/152] efi-srpm-macros-0:5-11.fc40.n 100% |   5.4 MiB/s |  22.3 KiB |  00m00s
[ 68/152] fonts-srpm-macros-1:2.0.5-14. 100% |   8.6 MiB/s |  26.5 KiB |  00m00s
[ 69/152] dwz-0:0.15-5.fc40.s390x       100% |  12.8 MiB/s | 144.5 KiB |  00m00s
[ 70/152] forge-srpm-macros-0:0.2.0-3.f 100% |   4.6 MiB/s |  18.7 KiB |  00m00s
[ 71/152] fpc-srpm-macros-0:1.3-12.fc40 100% |   2.5 MiB/s |   7.8 KiB |  00m00s
[ 72/152] ghc-srpm-macros-0:1.6.1-5.fc4 100% |   2.7 MiB/s |   8.3 KiB |  00m00s
[ 73/152] gnat-srpm-macros-0:6-5.fc40.n 100% |   2.9 MiB/s |   8.8 KiB |  00m00s
[ 74/152] kernel-srpm-macros-0:1.0-22.f 100% |   3.1 MiB/s |   9.6 KiB |  00m00s
[ 75/152] go-srpm-macros-0:3.3.1-3.fc40 100% |   6.7 MiB/s |  27.5 KiB |  00m00s
[ 76/152] lua-srpm-macros-0:1-11.fc40.n 100% |   2.8 MiB/s |   8.6 KiB |  00m00s
[ 77/152] openblas-srpm-macros-0:2-16.f 100% |   2.4 MiB/s |   7.5 KiB |  00m00s
[ 78/152] ocaml-srpm-macros-0:9-3.fc40. 100% |   2.2 MiB/s |   9.1 KiB |  00m00s
[ 79/152] package-notes-srpm-macros-0:0 100% |   3.2 MiB/s |   9.9 KiB |  00m00s
[ 80/152] pyproject-srpm-macros-0:1.12. 100% |   4.4 MiB/s |  13.6 KiB |  00m00s
[ 81/152] perl-srpm-macros-0:1-53.fc40. 100% |   2.0 MiB/s |   8.4 KiB |  00m00s
[ 82/152] python-srpm-macros-0:3.12-7.f 100% |   7.8 MiB/s |  23.8 KiB |  00m00s
[ 83/152] qt6-srpm-macros-0:6.6.1-5.fc4 100% |   2.9 MiB/s |   8.9 KiB |  00m00s
[ 84/152] qt5-srpm-macros-0:5.15.12-3.f 100% |   2.8 MiB/s |   8.5 KiB |  00m00s
[ 85/152] rust-srpm-macros-0:25.2-4.fc4 100% |   4.1 MiB/s |  12.7 KiB |  00m00s
[ 86/152] zig-srpm-macros-0:1-2.fc40.no 100% |   2.0 MiB/s |   8.0 KiB |  00m00s
[ 87/152] pkgconf-0:1.9.5-4.fc40.s390x  100% |  10.4 MiB/s |  42.7 KiB |  00m00s
[ 88/152] pkgconf-m4-0:1.9.5-4.fc40.noa 100% |   4.5 MiB/s |  13.8 KiB |  00m00s
[ 89/152] zip-0:3.0-40.fc40.s390x       100% |  34.5 MiB/s | 282.8 KiB |  00m00s
[ 90/152] libpkgconf-0:1.9.5-4.fc40.s39 100% |   7.4 MiB/s |  38.0 KiB |  00m00s
[ 91/152] authselect-0:1.5.0-3.fc40.s39 100% |  28.0 MiB/s | 143.5 KiB |  00m00s
[ 92/152] ed-0:1.20-2.fc40.s390x        100% |  13.6 MiB/s |  83.6 KiB |  00m00s
[ 93/152] gdbm-1:1.23-6.fc40.s390x      100% |  29.6 MiB/s | 151.5 KiB |  00m00s
[ 94/152] libnsl2-0:2.0.1-1.fc40.s390x  100% |   4.8 MiB/s |  29.4 KiB |  00m00s
[ 95/152] gdbm-libs-1:1.23-6.fc40.s390x 100% |   6.3 MiB/s |  58.0 KiB |  00m00s
[ 96/152] libpwquality-0:1.4.5-9.fc40.s 100% |  17.8 MiB/s | 109.2 KiB |  00m00s
[ 97/152] libtirpc-0:1.3.4-1.rc2.fc40.2 100% |  18.8 MiB/s |  96.5 KiB |  00m00s
[ 98/152] crypto-policies-0:20240201-1. 100% |  13.5 MiB/s |  69.0 KiB |  00m00s
[ 99/152] ca-certificates-0:2023.2.62_v 100% | 105.2 MiB/s | 862.1 KiB |  00m00s
[100/152] openssl-libs-1:3.1.4-4.fc40.s 100% | 134.2 MiB/s |   1.9 MiB |  00m00s
[101/152] ncurses-base-0:6.4-12.2024012 100% |  12.5 MiB/s |  63.8 KiB |  00m00s
[102/152] krb5-libs-0:1.21.2-5.fc40.s39 100% |  84.7 MiB/s | 780.6 KiB |  00m00s
[103/152] libcom_err-0:1.47.0-4.fc40.s3 100% |   4.2 MiB/s |  25.8 KiB |  00m00s
[104/152] libsepol-0:3.6-3.fc40.s390x   100% |  48.6 MiB/s | 348.5 KiB |  00m00s
[105/152] cracklib-0:2.9.11-5.fc40.s390 100% |  16.3 MiB/s |  83.5 KiB |  00m00s
[106/152] pcre2-0:10.42-2.fc40.2.s390x  100% |  41.6 MiB/s | 255.4 KiB |  00m00s
[107/152] libxml2-0:2.12.5-1.fc40.s390x 100% |  76.8 MiB/s | 708.0 KiB |  00m00s
[108/152] keyutils-libs-0:1.6.3-3.fc40. 100% |   6.1 MiB/s |  31.4 KiB |  00m00s
[109/152] libverto-0:0.3.2-8.fc40.s390x 100% |   4.1 MiB/s |  20.8 KiB |  00m00s
[110/152] basesystem-0:11-20.fc40.noarc 100% |   1.8 MiB/s |   7.2 KiB |  00m00s
[111/152] glibc-common-0:2.38.9000-39.f 100% |  48.3 MiB/s | 395.8 KiB |  00m00s
[112/152] gmp-1:6.2.1-8.fc40.s390x      100% |  45.5 MiB/s | 326.3 KiB |  00m00s
[113/152] filesystem-0:3.18-8.fc40.s390 100% |  97.1 MiB/s |   1.1 MiB |  00m00s
[114/152] mpfr-0:4.2.1-3.fc40.s390x     100% |  41.8 MiB/s | 299.6 KiB |  00m00s
[115/152] fedora-repos-0:40-0.2.noarch  100% |   2.3 MiB/s |   9.3 KiB |  00m00s
[116/152] file-libs-0:5.45-3.fc40.s390x 100% |  94.0 MiB/s | 769.9 KiB |  00m00s
[117/152] elfutils-libs-0:0.190-6.fc40. 100% |  45.2 MiB/s | 277.9 KiB |  00m00s
[118/152] libstdc++-0:14.0.1-0.4.fc40.s 100% | 105.8 MiB/s | 975.0 KiB |  00m00s
[119/152] p11-kit-0:0.25.3-4.fc40.s390x 100% |  46.1 MiB/s | 519.2 KiB |  00m00s
[120/152] p11-kit-trust-0:0.25.3-4.fc40 100% |  23.4 MiB/s | 143.6 KiB |  00m00s
[121/152] coreutils-common-0:9.4-6.fc40 100% | 141.7 MiB/s |   2.1 MiB |  00m00s
[122/152] elfutils-debuginfod-client-0: 100% |   6.2 MiB/s |  38.2 KiB |  00m00s
[123/152] alternatives-0:1.26-3.fc40.s3 100% |   4.0 MiB/s |  40.9 KiB |  00m00s
[124/152] binutils-gold-0:2.41-32.fc40. 100% |  81.1 MiB/s | 996.9 KiB |  00m00s
[125/152] jansson-0:2.13.1-9.fc40.s390x 100% |   8.7 MiB/s |  44.6 KiB |  00m00s
[126/152] lua-libs-0:5.4.6-5.fc40.s390x 100% |  19.9 MiB/s | 142.6 KiB |  00m00s
[127/152] sqlite-libs-0:3.45.1-2.fc40.s 100% |  92.9 MiB/s | 761.3 KiB |  00m00s
[128/152] libgomp-0:14.0.1-0.4.fc40.s39 100% |  36.4 MiB/s | 335.9 KiB |  00m00s
[129/152] pcre2-syntax-0:10.42-2.fc40.2 100% |  34.8 MiB/s | 142.7 KiB |  00m00s
[130/152] rpm-sequoia-0:1.6.0-2.fc40.s3 100% |  47.9 MiB/s | 980.7 KiB |  00m00s
[131/152] libffi-0:3.4.4-7.fc40.s390x   100% |   6.9 MiB/s |  35.5 KiB |  00m00s
[132/152] libtasn1-0:4.19.0-6.fc40.s390 100% |  12.7 MiB/s |  77.8 KiB |  00m00s
[133/152] fedora-gpg-keys-0:40-0.2.noar 100% |  29.1 MiB/s | 119.4 KiB |  00m00s
[134/152] fedora-repos-rawhide-0:40-0.2 100% |   2.2 MiB/s |   8.9 KiB |  00m00s
[135/152] elfutils-default-yama-scope-0 100% |   3.1 MiB/s |  12.9 KiB |  00m00s
[136/152] fedora-release-0:40-0.29.noar 100% |   3.3 MiB/s |  10.0 KiB |  00m00s
[137/152] curl-0:8.6.0-3.fc40.s390x     100% |  59.5 MiB/s | 304.9 KiB |  00m00s
[138/152] fedora-release-identity-basic 100% |   3.5 MiB/s |  10.8 KiB |  00m00s
[139/152] libcurl-0:8.6.0-3.fc40.s390x  100% |  59.6 MiB/s | 366.1 KiB |  00m00s
[140/152] xxhash-libs-0:0.8.2-2.fc40.s3 100% |   7.1 MiB/s |  36.3 KiB |  00m00s
[141/152] libidn2-0:2.3.7-1.fc40.s390x  100% |  18.4 MiB/s | 113.3 KiB |  00m00s
[142/152] libbrotli-0:1.1.0-3.fc40.s390 100% |  53.9 MiB/s | 386.6 KiB |  00m00s
[143/152] libnghttp2-0:1.59.0-2.fc40.s3 100% |  12.9 MiB/s |  79.4 KiB |  00m00s
[144/152] libpsl-0:0.21.5-3.fc40.s390x  100% |  10.5 MiB/s |  64.4 KiB |  00m00s
[145/152] libssh-0:0.10.6-4.fc40.s390x  100% |  34.1 MiB/s | 209.3 KiB |  00m00s
[146/152] openldap-0:2.6.6-1.fc39.s390x 100% |  36.6 MiB/s | 262.0 KiB |  00m00s
[147/152] cyrus-sasl-lib-0:2.1.28-19.fc 100% |  89.0 MiB/s | 820.6 KiB |  00m00s
[148/152] libevent-0:2.1.12-11.fc40.s39 100% |  36.2 MiB/s | 259.6 KiB |  00m00s
[149/152] libssh-config-0:0.10.6-4.fc40 100% |   2.9 MiB/s |   9.0 KiB |  00m00s
[150/152] libunistring-0:1.1-7.fc40.s39 100% |  78.1 MiB/s | 560.1 KiB |  00m00s
[151/152] publicsuffix-list-dafsa-0:202 100% |  11.3 MiB/s |  58.1 KiB |  00m00s
[152/152] gdb-minimal-0:14.1-8.fc40.s39 100% | 852.0 KiB/s |   4.2 MiB |  00m05s
--------------------------------------------------------------------------------
[152/152] Total                         100% |   9.5 MiB/s |  52.2 MiB |  00m05s
Running transaction
[  1/154] Verify package files          100% | 849.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-8.fc40.s390x
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-8.fc40.s390x
[  2/154] Prepare transaction           100% |   2.9 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.0.1-0. 100% | 170.8 MiB/s | 174.9 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.4.fc40.s390x
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.4.fc40.s390x
[  4/154] Installing crypto-policies-0: 100% |  35.5 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240201-1.git9f501f3.fc40
>>> Stop post-install scriptlet: crypto-policies-0:20240201-1.git9f501f3.fc40.no
[  5/154] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0   B |  00m00s
[  6/154] Installing fedora-gpg-keys-0: 100% |  40.9 MiB/s | 167.6 KiB |  00m00s
[  7/154] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/154] Installing fedora-repos-0:40- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/154] Installing fedora-release-com 100% |  22.6 MiB/s |  23.2 KiB |  00m00s
[ 10/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/154] Installing setup-0:2.14.5-2.f 100% |  50.6 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
[ 12/154] Installing filesystem-0:3.18- 100% |   2.7 MiB/s | 212.4 KiB |  00m00s
[ 13/154] Installing basesystem-0:11-20 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/154] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 15/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB |  00m00s
[ 17/154] Installing coreutils-common-0 100% | 293.9 MiB/s |  11.5 MiB |  00m00s
[ 18/154] Installing ncurses-base-0:6.4 100% |  85.8 MiB/s | 351.6 KiB |  00m00s
[ 19/154] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 20/154] Installing ncurses-libs-0:6.4 100% | 212.5 MiB/s |   1.1 MiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.38.9000-39.fc40.s390x
>>> Stop pre-install scriptlet: glibc-0:2.38.9000-39.fc40.s390x
[ 21/154] Installing glibc-0:2.38.9000- 100% | 193.6 MiB/s |   5.4 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.38.9000-39.fc40.s390x
>>> Stop post-install scriptlet: glibc-0:2.38.9000-39.fc40.s390x
[ 22/154] Installing bash-0:5.2.26-2.fc 100% | 321.5 MiB/s |   8.4 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-2.fc40.s390x
>>> Stop post-install scriptlet: bash-0:5.2.26-2.fc40.s390x
[ 23/154] Installing glibc-common-0:2.3 100% | 184.7 MiB/s |   1.1 MiB |  00m00s
[ 24/154] Installing glibc-gconv-extra- 100% | 222.7 MiB/s |   7.8 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.38.9000-39.fc40.s390x
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.38.9000-39.fc40.s390x
[ 25/154] Installing zlib-ng-compat-0:2 100% | 115.4 MiB/s | 118.2 KiB |  00m00s
[ 26/154] Installing xz-libs-0:5.4.6-1. 100% | 221.3 MiB/s | 226.7 KiB |  00m00s
[ 27/154] Installing bzip2-libs-0:1.0.8 100% |  87.5 MiB/s |  89.6 KiB |  00m00s
[ 28/154] Installing libuuid-0:2.40-0.1 100% |   0.0   B/s |  38.7 KiB |  00m00s
[ 29/154] Installing readline-0:8.2-8.f 100% | 272.9 MiB/s | 558.9 KiB |  00m00s
[ 30/154] Installing libzstd-0:1.5.5-5. 100% | 282.9 MiB/s | 869.0 KiB |  00m00s
[ 31/154] Installing elfutils-libelf-0: 100% | 332.4 MiB/s |   1.0 MiB |  00m00s
[ 32/154] Installing popt-0:1.19-6.fc40 100% |  73.9 MiB/s | 151.3 KiB |  00m00s
[ 33/154] Installing libstdc++-0:14.0.1 100% | 283.9 MiB/s |   3.1 MiB |  00m00s
[ 34/154] Installing libblkid-0:2.40-0. 100% | 255.8 MiB/s | 262.0 KiB |  00m00s
[ 35/154] Installing libxcrypt-0:4.4.36 100% | 270.9 MiB/s | 277.4 KiB |  00m00s
[ 36/154] Installing libattr-0:2.5.2-3. 100% |   0.0   B/s |  29.3 KiB |  00m00s
[ 37/154] Installing libacl-0:2.3.2-1.f 100% |   0.0   B/s |  44.6 KiB |  00m00s
[ 38/154] Installing gmp-1:6.2.1-8.fc40 100% | 251.1 MiB/s | 771.5 KiB |  00m00s
[ 39/154] Installing lz4-libs-0:1.9.4-6 100% | 170.2 MiB/s | 174.3 KiB |  00m00s
[ 40/154] Installing libeconf-0:0.5.2-3 100% |   0.0   B/s |  57.5 KiB |  00m00s
[ 41/154] Installing gdbm-libs-1:1.23-6 100% | 132.0 MiB/s | 135.1 KiB |  00m00s
[ 42/154] Installing mpfr-0:4.2.1-3.fc4 100% | 228.0 MiB/s | 700.3 KiB |  00m00s
[ 43/154] Installing gawk-0:5.3.0-3.fc4 100% | 259.2 MiB/s |   1.8 MiB |  00m00s
[ 44/154] Installing dwz-0:0.15-5.fc40. 100% | 312.5 MiB/s | 319.9 KiB |  00m00s
[ 45/154] Installing unzip-0:6.0-63.fc4 100% | 200.0 MiB/s | 409.5 KiB |  00m00s
[ 46/154] Installing file-libs-0:5.45-3 100% | 497.3 MiB/s |   9.9 MiB |  00m00s
[ 47/154] Installing file-0:5.45-3.fc40 100% | 102.3 MiB/s | 104.8 KiB |  00m00s
[ 48/154] Installing libsmartcols-0:2.4 100% | 189.3 MiB/s | 193.9 KiB |  00m00s
[ 49/154] Installing libcap-ng-0:0.8.4- 100% |  76.7 MiB/s |  78.5 KiB |  00m00s
[ 50/154] Installing audit-libs-0:4.0-7 100% | 160.6 MiB/s | 329.0 KiB |  00m00s
[ 51/154] Installing pam-libs-0:1.6.0-1 100% | 129.5 MiB/s | 132.6 KiB |  00m00s
[ 52/154] Installing libcap-0:2.69-3.fc 100% | 115.1 MiB/s | 235.8 KiB |  00m00s
[ 53/154] Installing systemd-libs-0:255 100% | 247.8 MiB/s |   2.0 MiB |  00m00s
[ 54/154] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.1 KiB |  00m00s
[ 55/154] Installing libsepol-0:3.6-3.f 100% | 276.9 MiB/s | 850.8 KiB |  00m00s
[ 56/154] Installing pcre2-0:10.42-2.fc 100% | 218.3 MiB/s | 670.7 KiB |  00m00s
[ 57/154] Installing libselinux-0:3.6-4 100% | 185.7 MiB/s | 190.2 KiB |  00m00s
[ 58/154] Installing sed-0:4.9-1.fc40.s 100% | 215.2 MiB/s | 881.4 KiB |  00m00s
[ 59/154] Installing grep-0:3.11-7.fc40 100% | 203.7 MiB/s |   1.0 MiB |  00m00s
[ 60/154] Installing findutils-1:4.9.0- 100% | 250.7 MiB/s |   1.5 MiB |  00m00s
[ 61/154] Installing xz-0:5.4.6-1.fc40. 100% | 222.5 MiB/s |   2.0 MiB |  00m00s
[ 62/154] Installing libmount-0:2.40-0. 100% | 184.3 MiB/s | 377.4 KiB |  00m00s
[ 63/154] Installing alternatives-0:1.2 100% |  66.2 MiB/s |  67.8 KiB |  00m00s
[ 64/154] Installing jansson-0:2.13.1-9 100% |  91.3 MiB/s |  93.5 KiB |  00m00s
[ 65/154] Installing lua-libs-0:5.4.6-5 100% | 318.4 MiB/s | 326.0 KiB |  00m00s
[ 66/154] Installing libtasn1-0:4.19.0- 100% | 184.9 MiB/s | 189.3 KiB |  00m00s
[ 67/154] Installing libunistring-0:1.1 100% | 295.6 MiB/s |   1.8 MiB |  00m00s
[ 68/154] Installing libidn2-0:2.3.7-1. 100% | 110.3 MiB/s | 338.9 KiB |  00m00s
[ 69/154] Installing libpsl-0:0.21.5-3. 100% |  79.5 MiB/s |  81.4 KiB |  00m00s
[ 70/154] Installing util-linux-core-0: 100% | 201.6 MiB/s |   1.4 MiB |  00m00s
[ 71/154] Installing tar-2:1.35-3.fc40. 100% | 302.0 MiB/s |   3.0 MiB |  00m00s
[ 72/154] Installing libsemanage-0:3.6- 100% | 148.0 MiB/s | 303.1 KiB |  00m00s
[ 73/154] Installing shadow-utils-2:4.1 100% | 145.9 MiB/s |   4.1 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.s390x
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.s390x
[ 74/154] Installing libutempter-0:1.2. 100% |  57.9 MiB/s |  59.3 KiB |  00m00s
[ 75/154] Installing zip-0:3.0-40.fc40. 100% | 246.8 MiB/s | 758.1 KiB |  00m00s
[ 76/154] Installing gdbm-1:1.23-6.fc40 100% | 159.1 MiB/s | 488.8 KiB |  00m00s
[ 77/154] Installing cyrus-sasl-lib-0:2 100% | 264.2 MiB/s |   2.4 MiB |  00m00s
[ 78/154] Installing zstd-0:1.5.5-5.fc4 100% | 300.3 MiB/s |   1.8 MiB |  00m00s
[ 79/154] Installing libfdisk-0:2.40-0. 100% | 129.0 MiB/s | 396.4 KiB |  00m00s
[ 80/154] Installing bzip2-0:1.0.8-18.f 100% |  50.6 MiB/s | 103.7 KiB |  00m00s
[ 81/154] Installing libxml2-0:2.12.5-1 100% | 171.2 MiB/s |   1.9 MiB |  00m00s
[ 82/154] Installing sqlite-libs-0:3.45 100% | 174.8 MiB/s |   1.6 MiB |  00m00s
[ 83/154] Installing ed-0:1.20-2.fc40.s 100% | 148.9 MiB/s | 152.5 KiB |  00m00s
[ 84/154] Installing patch-0:2.7.6-24.f 100% | 146.4 MiB/s | 299.8 KiB |  00m00s
[ 85/154] Installing elfutils-default-y 100% | 510.7 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-6.fc40.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-6.fc40.noar
[ 86/154] Installing cpio-0:2.15-1.fc40 100% | 186.5 MiB/s |   1.1 MiB |  00m00s
[ 87/154] Installing diffutils-0:3.10-5 100% | 230.9 MiB/s |   1.6 MiB |  00m00s
[ 88/154] Installing libpkgconf-0:1.9.5 100% |  84.9 MiB/s |  86.9 KiB |  00m00s
[ 89/154] Installing pkgconf-0:1.9.5-4. 100% |  84.1 MiB/s |  86.1 KiB |  00m00s
[ 90/154] Installing keyutils-libs-0:1. 100% |  54.3 MiB/s |  55.6 KiB |  00m00s
[ 91/154] Installing libverto-0:0.3.2-8 100% |  30.3 MiB/s |  31.1 KiB |  00m00s
[ 92/154] Installing libgomp-0:14.0.1-0 100% | 259.3 MiB/s | 531.1 KiB |  00m00s
[ 93/154] Installing libffi-0:3.4.4-7.f 100% |  65.0 MiB/s |  66.5 KiB |  00m00s
[ 94/154] Installing p11-kit-0:0.25.3-4 100% | 226.8 MiB/s |   2.5 MiB |  00m00s
[ 95/154] Installing p11-kit-trust-0:0. 100% |  77.0 MiB/s | 472.9 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.s390x
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.s390x
[ 96/154] Installing openssl-libs-1:3.1 100% | 257.3 MiB/s |   5.7 MiB |  00m00s
[ 97/154] Installing coreutils-0:9.4-6. 100% | 258.9 MiB/s |   6.2 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar
[ 98/154] Installing ca-certificates-0: 100% |   2.3 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa
[ 99/154] Installing krb5-libs-0:1.21.2 100% | 245.2 MiB/s |   2.5 MiB |  00m00s
[100/154] Installing libtirpc-0:1.3.4-1 100% | 211.3 MiB/s | 216.4 KiB |  00m00s
[101/154] Installing gzip-0:1.13-1.fc40 100% | 198.4 MiB/s | 406.3 KiB |  00m00s
>>> Running pre-install scriptlet: authselect-libs-0:1.5.0-3.fc40.s390x
>>> Stop pre-install scriptlet: authselect-libs-0:1.5.0-3.fc40.s390x
[102/154] Installing authselect-libs-0: 100% | 196.1 MiB/s |   1.0 MiB |  00m00s
[103/154] Installing authselect-0:1.5.0 100% |  78.4 MiB/s | 160.6 KiB |  00m00s
[104/154] Installing cracklib-0:2.9.11- 100% |  85.1 MiB/s | 261.4 KiB |  00m00s
[105/154] Installing libpwquality-0:1.4 100% | 105.8 MiB/s | 433.2 KiB |  00m00s
[106/154] Installing libnsl2-0:2.0.1-1. 100% |  61.4 MiB/s |  62.8 KiB |  00m00s
[107/154] Installing pam-0:1.6.0-1.fc40 100% | 149.7 MiB/s |   1.8 MiB |  00m00s
[108/154] Installing libssh-0:0.10.6-4. 100% | 259.4 MiB/s | 531.2 KiB |  00m00s
[109/154] Installing libarchive-0:3.7.2 100% | 248.2 MiB/s |   1.0 MiB |  00m00s
[110/154] Installing rpm-sequoia-0:1.6. 100% | 337.2 MiB/s |   3.0 MiB |  00m00s
[111/154] Installing rpm-libs-0:4.19.1- 100% | 264.0 MiB/s | 811.1 KiB |  00m00s
[112/154] Installing libevent-0:2.1.12- 100% | 306.8 MiB/s | 942.5 KiB |  00m00s
[113/154] Installing openldap-0:2.6.6-1 100% | 219.0 MiB/s | 672.8 KiB |  00m00s
[114/154] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  69.4 KiB |  00m00s
[115/154] Installing libbrotli-0:1.1.0- 100% | 226.4 MiB/s | 927.4 KiB |  00m00s
[116/154] Installing libnghttp2-0:1.59. 100% | 171.0 MiB/s | 175.1 KiB |  00m00s
[117/154] Installing libcurl-0:8.6.0-3. 100% | 200.6 MiB/s | 821.7 KiB |  00m00s
[118/154] Installing elfutils-debuginfo 100% |  64.9 MiB/s |  66.4 KiB |  00m00s
[119/154] Installing elfutils-libs-0:0. 100% | 240.8 MiB/s | 739.9 KiB |  00m00s
[120/154] Installing binutils-gold-0:2. 100% | 190.4 MiB/s |   2.9 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.41-32.fc40.s390x
>>> Stop post-install scriptlet: binutils-gold-0:2.41-32.fc40.s390x
[121/154] Installing binutils-0:2.41-32 100% | 305.2 MiB/s |  25.9 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.41-32.fc40.s390x
>>> Stop post-install scriptlet: binutils-0:2.41-32.fc40.s390x
[122/154] Installing elfutils-0:0.190-6 100% | 326.6 MiB/s |   2.9 MiB |  00m00s
[123/154] Installing gdb-minimal-0:14.1 100% | 284.6 MiB/s |  12.5 MiB |  00m00s
[124/154] Installing debugedit-0:5.0-14 100% | 200.4 MiB/s | 205.2 KiB |  00m00s
[125/154] Installing rpm-build-libs-0:4 100% | 202.2 MiB/s | 207.0 KiB |  00m00s
[126/154] Installing curl-0:8.6.0-3.fc4 100% |  67.5 MiB/s | 760.7 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1-4.fc40.s390x
>>> Stop pre-install scriptlet: rpm-0:4.19.1-4.fc40.s390x
[127/154] Installing rpm-0:4.19.1-4.fc4 100% | 149.9 MiB/s |   2.4 MiB |  00m00s
[128/154] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[129/154] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[130/154] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[131/154] Installing pkgconf-m4-0:1.9.5 100% |   0.0   B/s |  14.3 KiB |  00m00s
[132/154] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[133/154] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.8 KiB |  00m00s
[134/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[135/154] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[136/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[137/154] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[138/154] Installing openblas-srpm-macr 100% |   0.0   B/s | 384.0   B |  00m00s
[139/154] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[140/154] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[141/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[142/154] Installing ghc-srpm-macros-0: 100% |   0.0   B/s | 648.0   B |  00m00s
[143/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[144/154] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[145/154] Installing fonts-srpm-macros- 100% |  55.1 MiB/s |  56.5 KiB |  00m00s
[146/154] Installing forge-srpm-macros- 100% |   0.0   B/s |  38.6 KiB |  00m00s
[147/154] Installing go-srpm-macros-0:3 100% |  60.2 MiB/s |  61.6 KiB |  00m00s
[148/154] Installing python-srpm-macros 100% |  50.1 MiB/s |  51.3 KiB |  00m00s
[149/154] Installing redhat-rpm-config- 100% |  92.6 MiB/s | 189.6 KiB |  00m00s
[150/154] Installing rpm-build-0:4.19.1 100% |  92.0 MiB/s | 188.4 KiB |  00m00s
[151/154] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[152/154] Installing util-linux-0:2.40- 100% | 187.2 MiB/s |   3.7 MiB |  00m00s
[153/154] Installing which-0:2.21-41.fc 100% |  84.1 MiB/s |  86.1 KiB |  00m00s
[154/154] Installing info-0:7.1-2.fc40. 100% | 352.6 KiB/s | 405.5 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.s390x
>>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.s390x
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.s390x
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-3.fc40.s390x
>>> Running post-transaction scriptlet: rpm-0:4.19.1-4.fc40.s390x
>>> Stop post-transaction scriptlet: rpm-0:4.19.1-4.fc40.s390x
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.s390x
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.s390x
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.s390x
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.s390x
Warning: skipped PGP checks for 152 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-3.fc40.s390x
ansible-srpm-macros-1-14.fc40.noarch
audit-libs-4.0-7.fc40.s390x
authselect-1.5.0-3.fc40.s390x
authselect-libs-1.5.0-3.fc40.s390x
basesystem-11-20.fc40.noarch
bash-5.2.26-2.fc40.s390x
binutils-2.41-32.fc40.s390x
binutils-gold-2.41-32.fc40.s390x
bzip2-1.0.8-18.fc40.s390x
bzip2-libs-1.0.8-18.fc40.s390x
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.4-6.fc40.s390x
coreutils-common-9.4-6.fc40.s390x
cpio-2.15-1.fc40.s390x
cracklib-2.9.11-5.fc40.s390x
crypto-policies-20240201-1.git9f501f3.fc40.noarch
curl-8.6.0-3.fc40.s390x
cyrus-sasl-lib-2.1.28-19.fc40.s390x
debugedit-5.0-14.fc40.s390x
diffutils-3.10-5.fc40.s390x
dwz-0.15-5.fc40.s390x
ed-1.20-2.fc40.s390x
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.190-6.fc40.s390x
elfutils-debuginfod-client-0.190-6.fc40.s390x
elfutils-default-yama-scope-0.190-6.fc40.noarch
elfutils-libelf-0.190-6.fc40.s390x
elfutils-libs-0.190-6.fc40.s390x
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.29.noarch
fedora-release-common-40-0.29.noarch
fedora-release-identity-basic-40-0.29.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-3.fc40.s390x
file-libs-5.45-3.fc40.s390x
filesystem-3.18-8.fc40.s390x
findutils-4.9.0-8.fc40.s390x
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.2.0-3.fc40.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.s390x
gdb-minimal-14.1-8.fc40.s390x
gdbm-1.23-6.fc40.s390x
gdbm-libs-1.23-6.fc40.s390x
ghc-srpm-macros-1.6.1-5.fc40.noarch
glibc-2.38.9000-39.fc40.s390x
glibc-common-2.38.9000-39.fc40.s390x
glibc-gconv-extra-2.38.9000-39.fc40.s390x
glibc-minimal-langpack-2.38.9000-39.fc40.s390x
gmp-6.2.1-8.fc40.s390x
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.3.1-3.fc40.noarch
grep-3.11-7.fc40.s390x
gzip-1.13-1.fc40.s390x
info-7.1-2.fc40.s390x
jansson-2.13.1-9.fc40.s390x
kernel-srpm-macros-1.0-22.fc40.noarch
keyutils-libs-1.6.3-3.fc40.s390x
krb5-libs-1.21.2-5.fc40.s390x
libacl-2.3.2-1.fc40.s390x
libarchive-3.7.2-3.fc40.s390x
libattr-2.5.2-3.fc40.s390x
libblkid-2.40-0.1.fc40.s390x
libbrotli-1.1.0-3.fc40.s390x
libcap-2.69-3.fc40.s390x
libcap-ng-0.8.4-4.fc40.s390x
libcom_err-1.47.0-4.fc40.s390x
libcurl-8.6.0-3.fc40.s390x
libeconf-0.5.2-3.fc40.s390x
libevent-2.1.12-11.fc40.s390x
libfdisk-2.40-0.1.fc40.s390x
libffi-3.4.4-7.fc40.s390x
libgcc-14.0.1-0.4.fc40.s390x
libgomp-14.0.1-0.4.fc40.s390x
libidn2-2.3.7-1.fc40.s390x
libmount-2.40-0.1.fc40.s390x
libnghttp2-1.59.0-2.fc40.s390x
libnsl2-2.0.1-1.fc40.s390x
libpkgconf-1.9.5-4.fc40.s390x
libpsl-0.21.5-3.fc40.s390x
libpwquality-1.4.5-9.fc40.s390x
libselinux-3.6-4.fc40.s390x
libsemanage-3.6-3.fc40.s390x
libsepol-3.6-3.fc40.s390x
libsmartcols-2.40-0.1.fc40.s390x
libssh-0.10.6-4.fc40.s390x
libssh-config-0.10.6-4.fc40.noarch
libstdc++-14.0.1-0.4.fc40.s390x
libtasn1-4.19.0-6.fc40.s390x
libtirpc-1.3.4-1.rc2.fc40.2.s390x
libunistring-1.1-7.fc40.s390x
libutempter-1.2.1-13.fc40.s390x
libuuid-2.40-0.1.fc40.s390x
libverto-0.3.2-8.fc40.s390x
libxcrypt-4.4.36-5.fc40.s390x
libxml2-2.12.5-1.fc40.s390x
libzstd-1.5.5-5.fc40.s390x
lua-libs-5.4.6-5.fc40.s390x
lua-srpm-macros-1-11.fc40.noarch
lz4-libs-1.9.4-6.fc40.s390x
mpfr-4.2.1-3.fc40.s390x
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.s390x
ocaml-srpm-macros-9-3.fc40.noarch
openblas-srpm-macros-2-16.fc40.noarch
openldap-2.6.6-1.fc39.s390x
openssl-libs-3.1.4-4.fc40.s390x
p11-kit-0.25.3-4.fc40.s390x
p11-kit-trust-0.25.3-4.fc40.s390x
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.0-1.fc40.s390x
pam-libs-1.6.0-1.fc40.s390x
patch-2.7.6-24.fc40.s390x
pcre2-10.42-2.fc40.2.s390x
pcre2-syntax-10.42-2.fc40.2.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-1.9.5-4.fc40.s390x
pkgconf-m4-1.9.5-4.fc40.noarch
pkgconf-pkg-config-1.9.5-4.fc40.s390x
popt-1.19-6.fc40.s390x
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-7.fc40.noarch
qt5-srpm-macros-5.15.12-3.fc40.noarch
qt6-srpm-macros-6.6.1-5.fc40.noarch
readline-8.2-8.fc40.s390x
redhat-rpm-config-280-1.fc40.noarch
rpm-4.19.1-4.fc40.s390x
rpm-build-4.19.1-4.fc40.s390x
rpm-build-libs-4.19.1-4.fc40.s390x
rpm-libs-4.19.1-4.fc40.s390x
rpm-sequoia-1.6.0-2.fc40.s390x
rust-srpm-macros-25.2-4.fc40.noarch
sed-4.9-1.fc40.s390x
setup-2.14.5-2.fc40.noarch
shadow-utils-4.14.0-4.fc40.s390x
sqlite-libs-3.45.1-2.fc40.s390x
systemd-libs-255.3-1.fc40.s390x
tar-1.35-3.fc40.s390x
unzip-6.0-63.fc40.s390x
util-linux-2.40-0.1.fc40.s390x
util-linux-core-2.40-0.1.fc40.s390x
which-2.21-41.fc40.s390x
xxhash-libs-0.8.2-2.fc40.s390x
xz-5.4.6-1.fc40.s390x
xz-libs-5.4.6-1.fc40.s390x
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.s390x
zlib-ng-compat-2.1.6-2.fc40.s390x
zstd-1.5.5-5.fc40.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1706659200
Wrote: /builddir/build/SRPMS/seqan-1.4.2-54.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1707147948.598533/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-tyhys4fc/seqan/seqan.spec) Config(child) 2 minutes 2 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/seqan-1.4.2-54.fc40.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1707147948.598533/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1707147948.598533/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1707147948.598533/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-4.fc40.s390x
  rpm-sequoia-1.6.0-2.fc40.s390x
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-3.fc40.s390x
  dnf5-plugins-5.1.11-3.fc40.s390x
Finish: chroot init
Start: build phase for seqan-1.4.2-54.fc40.src.rpm
Start: build setup for seqan-1.4.2-54.fc40.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1706659200
Wrote: /builddir/build/SRPMS/seqan-1.4.2-54.fc40.src.rpm
Updating and loading repositories:
 Copr repository                        100% |  64.0 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 164.9 KiB/s |   4.1 KiB |  00m00s
 fedora                                 100% |  16.4 KiB/s |   3.9 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version                          Repository                                                         Size
Installing:                                                                                                                                 
 boost-devel                 s390x  1.83.0-3.fc40                    copr_base                                                     143.0 MiB
 bzip2-devel                 s390x  1.0.8-18.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.8 KiB
 cmake                       s390x  3.28.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.1 MiB
 coin-or-lemon-devel         s390x  1.3.1-29.fc40                    copr_base                                                       2.5 MiB
 gcc                         s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.0 MiB
 gcc-c++                     s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.6 MiB
 java-1.8.0-openjdk-devel    s390x  1:1.8.0.402.b06-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.5 MiB
 libstdc++-static            s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.1 MiB
 llvm-devel                  s390x  17.0.6-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.5 MiB
 make                        s390x  1:4.4.1-6.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 python3-devel               s390x  3.12.1-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 python3-setuptools          noarch 68.2.2-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.1 MiB
 qt-devel                    s390x  1:4.8.7-76.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.9 MiB
 zlib-ng-compat-devel        s390x  2.1.6-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB
Installing dependencies:                                                                                                                    
 Lmod                        s390x  8.7.32-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 MUMPS                       s390x  5.6.2-3.fc40                     copr_base                                                       9.9 MiB
 MUMPS-common                noarch 5.6.2-3.fc40                     copr_base                                                     948.0 KiB
 abattis-cantarell-vf-fonts  noarch 0.301-12.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB
 alsa-lib                    s390x  1.2.11-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 annobin-docs                noarch 12.38-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.6 KiB
 annobin-plugin-gcc          s390x  12.38-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 966.5 KiB
 avahi-libs                  s390x  0.8-26.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181.6 KiB
 boost                       s390x  1.83.0-3.fc40                    copr_base                                                       1.3 KiB
 boost-atomic                s390x  1.83.0-3.fc40                    copr_base                                                      20.7 KiB
 boost-chrono                s390x  1.83.0-3.fc40                    copr_base                                                      41.2 KiB
 boost-container             s390x  1.83.0-3.fc40                    copr_base                                                      69.2 KiB
 boost-context               s390x  1.83.0-3.fc40                    copr_base                                                      16.3 KiB
 boost-contract              s390x  1.83.0-3.fc40                    copr_base                                                     106.4 KiB
 boost-coroutine             s390x  1.83.0-3.fc40                    copr_base                                                      20.9 KiB
 boost-date-time             s390x  1.83.0-3.fc40                    copr_base                                                      16.1 KiB
 boost-fiber                 s390x  1.83.0-3.fc40                    copr_base                                                      86.1 KiB
 boost-filesystem            s390x  1.83.0-3.fc40                    copr_base                                                     150.7 KiB
 boost-graph                 s390x  1.83.0-3.fc40                    copr_base                                                     369.2 KiB
 boost-iostreams             s390x  1.83.0-3.fc40                    copr_base                                                      94.0 KiB
 boost-json                  s390x  1.83.0-3.fc40                    copr_base                                                     363.9 KiB
 boost-locale                s390x  1.83.0-3.fc40                    copr_base                                                     635.1 KiB
 boost-log                   s390x  1.83.0-3.fc40                    copr_base                                                       1.5 MiB
 boost-math                  s390x  1.83.0-3.fc40                    copr_base                                                     713.5 KiB
 boost-nowide                s390x  1.83.0-3.fc40                    copr_base                                                      24.7 KiB
 boost-numpy3                s390x  1.83.0-3.fc40                    copr_base                                                      57.1 KiB
 boost-program-options       s390x  1.83.0-3.fc40                    copr_base                                                     291.2 KiB
 boost-python3               s390x  1.83.0-3.fc40                    copr_base                                                     256.2 KiB
 boost-random                s390x  1.83.0-3.fc40                    copr_base                                                      33.4 KiB
 boost-regex                 s390x  1.83.0-3.fc40                    copr_base                                                     302.1 KiB
 boost-serialization         s390x  1.83.0-3.fc40                    copr_base                                                     474.8 KiB
 boost-stacktrace            s390x  1.83.0-3.fc40                    copr_base                                                      63.2 KiB
 boost-system                s390x  1.83.0-3.fc40                    copr_base                                                      16.1 KiB
 boost-test                  s390x  1.83.0-3.fc40                    copr_base                                                     675.8 KiB
 boost-thread                s390x  1.83.0-3.fc40                    copr_base                                                     140.1 KiB
 boost-timer                 s390x  1.83.0-3.fc40                    copr_base                                                      24.8 KiB
 boost-type_erasure          s390x  1.83.0-3.fc40                    copr_base                                                      61.8 KiB
 boost-wave                  s390x  1.83.0-3.fc40                    copr_base                                                     689.9 KiB
 brotli                      s390x  1.1.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.6 KiB
 brotli-devel                s390x  1.1.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  65.6 KiB
 byte-buddy                  noarch 1.14.2-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 MiB
 byte-buddy-agent            noarch 1.14.2-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.2 KiB
 cairo                       s390x  1.18.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 cliquer-libs                s390x  1.22-8.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  75.4 KiB
 cmake-data                  noarch 3.28.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.0 MiB
 cmake-filesystem            s390x  3.28.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cmake-rpm-macros            noarch 3.28.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.4 KiB
 coin-or-Cbc                 s390x  2.10.5-16.fc40                   copr_base                                                       2.4 MiB
 coin-or-Cgl                 s390x  0.60.3-12.fc40                   copr_base                                                       1.1 MiB
 coin-or-Clp                 s390x  1.17.6-18.fc40                   copr_base                                                       2.6 MiB
 coin-or-CoinUtils           s390x  2.11.4-12.fc40                   copr_base                                                       1.3 MiB
 coin-or-Osi                 s390x  0.108.6-11.fc40                  copr_base                                                     960.5 KiB
 coin-or-lemon               s390x  1.3.1-29.fc40                    copr_base                                                     272.4 KiB
 copy-jdk-configs            noarch 4.1-5.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.3 KiB
 cpp                         s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 MiB
 crypto-policies-scripts     noarch 20240201-1.git9f501f3.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313.8 KiB
 cups-libs                   s390x  1:2.4.7-9.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 726.7 KiB
 dbus-libs                   s390x  1:1.14.10-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.8 KiB
 default-fonts-core-sans     noarch 4.0-11.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 double-conversion           s390x  3.3.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100.2 KiB
 duktape                     s390x  2.7.0-7.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 736.0 KiB
 emacs-filesystem            noarch 1:29.2-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                       s390x  2.5.0-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302.4 KiB
 flexiblas                   s390x  3.4.1-3.fc40                     copr_base                                                      46.7 KiB
 flexiblas-netlib            s390x  3.4.1-3.fc40                     copr_base                                                      11.5 MiB
 flexiblas-openblas-openmp   s390x  3.4.1-3.fc40                     copr_base                                                      39.2 KiB
 fontconfig                  s390x  2.15.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 801.0 KiB
 fontconfig-devel            s390x  2.15.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.2 KiB
 fonts-filesystem            noarch 1:2.0.5-14.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 freetype                    s390x  2.13.2-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 935.0 KiB
 freetype-devel              s390x  2.13.2-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 gc                          s390x  8.2.2-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 273.8 KiB
 gcc-plugin-annobin          s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  56.8 KiB
 gecode                      s390x  6.2.0-13.fc39                    copr_base                                                      15.5 MiB
 gettext                     s390x  0.22-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 MiB
 gettext-envsubst            s390x  0.22-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  74.7 KiB
 gettext-libs                s390x  0.22-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gettext-runtime             s390x  0.22-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 466.4 KiB
 gl-manpages                 noarch 1.1-31.20190306.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 935.5 KiB
 glib2                       s390x  2.79.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.7 MiB
 glib2-devel                 s390x  2.79.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.1 MiB
 glibc-devel                 s390x  2.38.9000-39.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 470.9 KiB
 glibc-headers-s390          noarch 2.38.9000-39.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 glpk                        s390x  5.0-11.fc40                      copr_base                                                     930.7 KiB
 glx-utils                   s390x  9.0.0-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 454.5 KiB
 gnutls                      s390x  3.8.3-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 google-noto-fonts-common    noarch 20240101-1.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.4 KiB
 google-noto-sans-vf-fonts   noarch 20240101-1.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 graphite2                   s390x  1.3.14-15.fc40                   copr_base                                                     207.4 KiB
 graphite2-devel             s390x  1.3.14-15.fc40                   copr_base                                                      49.1 KiB
 gsl                         s390x  2.7.1-7.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.7 MiB
 guile30                     s390x  3.0.7-12.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.5 MiB
 hamcrest                    noarch 2.2-14.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.7 KiB
 harfbuzz                    s390x  8.3.0-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 harfbuzz-devel              s390x  8.3.0-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 MiB
 harfbuzz-icu                s390x  8.3.0-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.3 KiB
 jacop                       noarch 4.9.0-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 java-1.8.0-openjdk          s390x  1:1.8.0.402.b06-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 java-1.8.0-openjdk-headless s390x  1:1.8.0.402.b06-1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105.1 MiB
 java-17-openjdk-headless    s390x  1:17.0.10.0.7-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.0 MiB
 javapackages-filesystem     noarch 6.2.0-8.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 javapackages-tools          noarch 6.2.0-8.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.1 KiB
 jbigkit-libs                s390x  2.1-29.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.2 KiB
 jsoncpp                     s390x  1.9.5-7.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 247.5 KiB
 junit                       noarch 1:4.13.2-4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 415.0 KiB
 kernel-headers              s390x  6.8.0-0.rc3.26.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 MiB
 lcms2                       s390x  2.16-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.7 KiB
 libICE                      s390x  1.1.1-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.9 KiB
 libICE-devel                s390x  1.1.1-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.8 KiB
 libSM                       s390x  1.2.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105.1 KiB
 libSM-devel                 s390x  1.2.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.8 KiB
 libX11                      s390x  1.8.7-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 libX11-common               noarch 1.8.7-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libX11-devel                s390x  1.8.7-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 libX11-xcb                  s390x  1.8.7-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.8 KiB
 libXau                      s390x  1.0.11-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.6 KiB
 libXau-devel                s390x  1.0.11-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.4 KiB
 libXcomposite               s390x  0.4.6-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  44.3 KiB
 libXcursor                  s390x  1.2.1-7.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.3 KiB
 libXcursor-devel            s390x  1.2.1-7.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 libXext                     s390x  1.3.6-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.7 KiB
 libXext-devel               s390x  1.3.6-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.9 KiB
 libXfixes                   s390x  6.0.1-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.1 KiB
 libXfixes-devel             s390x  6.0.1-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.2 KiB
 libXft                      s390x  2.3.8-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 172.2 KiB
 libXft-devel                s390x  2.3.8-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.7 KiB
 libXi                       s390x  1.8.1-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.4 KiB
 libXi-devel                 s390x  1.8.1-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.6 KiB
 libXinerama                 s390x  1.1.5-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.8 KiB
 libXinerama-devel           s390x  1.1.5-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.0 KiB
 libXrandr                   s390x  1.5.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.5 KiB
 libXrandr-devel             s390x  1.5.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 libXrender                  s390x  0.9.11-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.9 KiB
 libXrender-devel            s390x  0.9.11-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.1 KiB
 libXt                       s390x  1.3.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 477.5 KiB
 libXt-devel                 s390x  1.3.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 libXtst                     s390x  1.2.4-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.3 KiB
 libXv                       s390x  1.0.12-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.8 KiB
 libXv-devel                 s390x  1.0.12-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.3 KiB
 libXxf86vm                  s390x  1.1.5-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.1 KiB
 libasan                     s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 libatomic                   s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.3 KiB
 libb2                       s390x  0.98.1-11.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  42.0 KiB
 libblkid-devel              s390x  2.40-0.1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.3 KiB
 libdrm                      s390x  2.4.120-3.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.9 KiB
 libedit                     s390x  3.1-50.20230828cvs.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 279.7 KiB
 libedit-devel               s390x  3.1-50.20230828cvs.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.4 KiB
 libevdev                    s390x  1.13.1-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.9 KiB
 libffi-devel                s390x  3.4.4-7.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.5 KiB
 libfontenc                  s390x  1.1.7-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.5 KiB
 libgfortran                 s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 libglvnd                    s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 903.7 KiB
 libglvnd-core-devel         s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.3 KiB
 libglvnd-devel              s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 libglvnd-egl                s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.6 KiB
 libglvnd-gles               s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.7 KiB
 libglvnd-glx                s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 793.4 KiB
 libglvnd-opengl             s390x  1:1.7.0-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 217.1 KiB
 libgudev                    s390x  238-5.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  87.6 KiB
 libicu                      s390x  74.2-1.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.4 MiB
 libicu-devel                s390x  74.2-1.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 MiB
 libinput                    s390x  1.25.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 558.6 KiB
 libjpeg-turbo               s390x  2.1.4-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 523.4 KiB
 liblerc                     s390x  4.0.0-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 269.0 KiB
 libmng                      s390x  2.0.3-21.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 569.4 KiB
 libmount-devel              s390x  2.40-0.1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.6 KiB
 libmpc                      s390x  1.3.1-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 172.5 KiB
 libnauty                    s390x  2.8.8-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.7 MiB
 libpng                      s390x  2:1.6.40-3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 253.6 KiB
 libpng-devel                s390x  2:1.6.40-3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 885.1 KiB
 libproxy                    s390x  0.5.3-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.8 KiB
 libselinux-devel            s390x  3.6-4.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.1 KiB
 libsepol-devel              s390x  3.6-3.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.2 KiB
 libstdc++-devel             s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.3 MiB
 libtiff                     s390x  4.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 libtool-ltdl                s390x  2.4.7-10.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  74.0 KiB
 libubsan                    s390x  14.0.1-0.4.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491.3 KiB
 libuuid-devel               s390x  2.40-0.1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.6 KiB
 libuv                       s390x  1:1.47.0-6.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 547.0 KiB
 libwacom                    s390x  2.9.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.1 KiB
 libwacom-data               noarch 2.9.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 605.9 KiB
 libwayland-client           s390x  1.22.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  73.9 KiB
 libwayland-server           s390x  1.22.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  90.4 KiB
 libwebp                     s390x  1.3.2-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 657.3 KiB
 libxcb                      s390x  1.16-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 libxcb-devel                s390x  1.16-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.7 MiB
 libxcrypt-devel             s390x  4.4.36-5.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 libxkbcommon                s390x  1.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.0 KiB
 libxkbcommon-x11            s390x  1.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.4 KiB
 libxml2-devel               s390x  2.12.5-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.4 MiB
 libxshmfence                s390x  1.3.2-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.1 KiB
 lksctp-tools                s390x  1.0.19-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.2 KiB
 llvm                        s390x  17.0.6-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.6 MiB
 llvm-googletest             s390x  17.0.6-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 llvm-libs                   s390x  17.0.6-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 176.2 MiB
 llvm-static                 s390x  17.0.6-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.0 MiB
 llvm-test                   s390x  17.0.6-6.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 lua                         s390x  5.4.6-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.3 KiB
 lua-filesystem              s390x  1.8.0-11.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.6 KiB
 lua-json                    noarch 1.3.4-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.3 KiB
 lua-lpeg                    s390x  1.0.2-13.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 176.6 KiB
 lua-posix                   s390x  36.2.1-3.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 609.6 KiB
 lua-term                    s390x  0.08-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.6 KiB
 mesa-libEGL                 s390x  24.0.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 319.5 KiB
 mesa-libGL                  s390x  24.0.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 590.2 KiB
 mesa-libGLU                 s390x  9.0.3-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 409.4 KiB
 mesa-libGLU-devel           s390x  9.0.3-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.0 KiB
 mesa-libgbm                 s390x  24.0.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  73.1 KiB
 mesa-libglapi               s390x  24.0.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.7 KiB
 metis                       s390x  5.1.0.3-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 mkfontscale                 s390x  1.2.2-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.0 KiB
 mockito                     noarch 5.8.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 702.9 KiB
 mp                          s390x  3.1.0-45.20200303git7fd4828.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.4 MiB
 mpdecimal                   s390x  2.5.1-9.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 228.6 KiB
 mtdev                       s390x  1.1.6-8.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.1 KiB
 ncurses-c++-libs            s390x  6.4-12.20240127.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 161.1 KiB
 ncurses-devel               s390x  6.4-12.20240127.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.8 KiB
 nettle                      s390x  3.9.1-6.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 846.2 KiB
 nspr                        s390x  4.35.0-20.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 364.2 KiB
 nss                         s390x  3.97.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 nss-softokn                 s390x  3.97.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 nss-softokn-freebl          s390x  3.97.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 790.9 KiB
 nss-sysinit                 s390x  3.97.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.0 KiB
 nss-util                    s390x  3.97.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 242.0 KiB
 objectweb-asm               noarch 9.6-3.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398.8 KiB
 objenesis                   noarch 3.3-7.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.5 KiB
 openblas                    s390x  0.3.26-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp             s390x  0.3.26-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.2 MiB
 opentest4j                  noarch 1.3.0-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.2 KiB
 pcre2-devel                 s390x  10.42-2.fc40.2                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 pcre2-utf16                 s390x  10.42-2.fc40.2                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 613.9 KiB
 pcre2-utf32                 s390x  10.42-2.fc40.2                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 581.9 KiB
 pixman                      s390x  0.43.0-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 592.4 KiB
 procps-ng                   s390x  4.0.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 pyproject-rpm-macros        noarch 1.12.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.8 KiB
 python-pip-wheel            noarch 23.3.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python-rpm-macros           noarch 3.12-7.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.1 KiB
 python3                     s390x  3.12.1-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.7 KiB
 python3-libs                s390x  3.12.1-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.8 MiB
 python3-numpy               s390x  1:1.26.2-4.fc40                  copr_base                                                      42.1 MiB
 python3-packaging           noarch 23.2-4.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421.1 KiB
 python3-rpm-generators      noarch 14-10.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.7 KiB
 python3-rpm-macros          noarch 3.12-7.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.4 KiB
 qt                          s390x  1:4.8.7-76.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.1 MiB
 qt-common                   noarch 1:4.8.7-76.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 qt-settings                 noarch 39.1-6.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 qt-x11                      s390x  1:4.8.7-76.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.3 MiB
 qt5-qtbase                  s390x  5.15.12-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.9 MiB
 qt5-qtbase-common           noarch 5.15.12-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.0   B
 qt5-qtbase-gui              s390x  5.15.12-4.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.7 MiB
 rhash                       s390x  1.4.3-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 356.3 KiB
 scotch                      s390x  7.0.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 820.5 KiB
 scotch-devel                s390x  7.0.4-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.3 KiB
 suitesparse                 s390x  5.13.0-5.fc40                    copr_base                                                       4.6 MiB
 sysprof-capture-devel       s390x  45.1-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB
 tcl                         s390x  1:8.6.13-2.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.4 MiB
 ttmkfdir                    s390x  3.0.9-70.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.2 KiB
 tzdata                      noarch 2023d-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 tzdata-java                 noarch 2023d-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.5 KiB
 unixODBC                    s390x  2.3.12-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 vim-filesystem              noarch 2:9.1.031-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0   B
 xcb-util                    s390x  0.4.1-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.2 KiB
 xcb-util-image              s390x  0.4.1-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.0 KiB
 xcb-util-keysyms            s390x  0.4.1-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.6 KiB
 xcb-util-renderutil         s390x  0.3.10-5.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.2 KiB
 xcb-util-wm                 s390x  0.4.2-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105.1 KiB
 xkeyboard-config            noarch 2.40-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.6 MiB
 xml-common                  noarch 0.6.3-63.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.4 KiB
 xorg-x11-fonts-Type1        noarch 7.5-38.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863.3 KiB
 xorg-x11-proto-devel        noarch 2023.2-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 xz-devel                    s390x  5.4.6-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB

Transaction Summary:
 Installing:      285 packages

Total size of inbound packages is 421 MiB. Need to download 421 MiB.
After this operation 2 GiB will be used (install 2 GiB, remove 0 B).
[  1/285] bzip2-devel-0:1.0.8-18.fc40.s 100% |   5.6 MiB/s | 213.5 KiB |  00m00s
[  2/285] boost-devel-0:1.83.0-3.fc40.s 100% | 183.8 MiB/s |  11.8 MiB |  00m00s
[  3/285] coin-or-lemon-devel-0:1.3.1-2 100% |  10.0 MiB/s | 287.0 KiB |  00m00s
[  4/285] cmake-0:3.28.2-1.fc40.s390x   100% | 108.6 MiB/s |   9.3 MiB |  00m00s
[  5/285] gcc-c++-0:14.0.1-0.4.fc40.s39 100% | 148.6 MiB/s |  11.7 MiB |  00m00s
[  6/285] libstdc++-static-0:14.0.1-0.4 100% |  82.2 MiB/s |   1.0 MiB |  00m00s
[  7/285] gcc-0:14.0.1-0.4.fc40.s390x   100% | 227.7 MiB/s |  30.3 MiB |  00m00s
[  8/285] make-1:4.4.1-6.fc40.s390x     100% |  53.3 MiB/s | 600.9 KiB |  00m00s
[  9/285] python3-devel-0:3.12.1-4.fc40 100% |  38.2 MiB/s | 274.0 KiB |  00m00s
[ 10/285] python3-setuptools-0:68.2.2-3 100% | 100.5 MiB/s |   1.4 MiB |  00m00s
[ 11/285] java-1.8.0-openjdk-devel-1:1. 100% |  48.1 MiB/s |   7.4 MiB |  00m00s
[ 12/285] llvm-devel-0:17.0.6-6.fc40.s3 100% |  43.2 MiB/s |   3.6 MiB |  00m00s
[ 13/285] libICE-devel-0:1.1.1-3.fc40.s 100% |   8.9 MiB/s |  45.8 KiB |  00m00s
[ 14/285] zlib-ng-compat-devel-0:2.1.6- 100% |   3.9 MiB/s |  36.1 KiB |  00m00s
[ 15/285] libSM-devel-0:1.2.4-3.fc40.s3 100% |   1.9 MiB/s |  11.8 KiB |  00m00s
[ 16/285] libX11-devel-0:1.8.7-3.fc40.s 100% |  98.9 MiB/s | 911.8 KiB |  00m00s
[ 17/285] libXext-devel-0:1.3.6-1.fc40. 100% |  14.1 MiB/s |  72.3 KiB |  00m00s
[ 18/285] libXcursor-devel-0:1.2.1-7.fc 100% |   2.0 MiB/s |  29.0 KiB |  00m00s
[ 19/285] libXext-0:1.3.6-1.fc40.s390x  100% |   7.8 MiB/s |  40.0 KiB |  00m00s
[ 20/285] libXfixes-devel-0:6.0.1-3.fc4 100% |   2.4 MiB/s |  12.4 KiB |  00m00s
[ 21/285] libXft-devel-0:2.3.8-6.fc40.s 100% |   8.8 MiB/s |  36.2 KiB |  00m00s
[ 22/285] libXinerama-devel-0:1.1.5-6.f 100% |   3.2 MiB/s |  13.0 KiB |  00m00s
[ 23/285] libXrandr-devel-0:1.5.4-3.fc4 100% |   3.7 MiB/s |  19.1 KiB |  00m00s
[ 24/285] libXrender-devel-0:0.9.11-6.f 100% |   4.6 MiB/s |  18.9 KiB |  00m00s
[ 25/285] libXi-devel-0:1.8.1-5.fc40.s3 100% |   3.0 MiB/s | 103.0 KiB |  00m00s
[ 26/285] libXv-devel-0:1.0.12-3.fc40.s 100% |   7.5 MiB/s |  38.4 KiB |  00m00s
[ 27/285] libXt-devel-0:1.3.0-3.fc40.s3 100% |  15.3 MiB/s | 408.2 KiB |  00m00s
[ 28/285] libglvnd-devel-1:1.7.0-4.fc40 100% |  25.6 MiB/s | 157.1 KiB |  00m00s
[ 29/285] mesa-libGLU-devel-0:9.0.3-4.f 100% | 794.2 KiB/s |  11.9 KiB |  00m00s
[ 30/285] qt-1:4.8.7-76.fc40.s390x      100% | 159.0 MiB/s |   4.9 MiB |  00m00s
[ 31/285] xorg-x11-proto-devel-0:2023.2 100% |  25.7 MiB/s | 262.7 KiB |  00m00s
[ 32/285] qt-devel-1:4.8.7-76.fc40.s390 100% |  68.8 MiB/s |  10.2 MiB |  00m00s
[ 33/285] dbus-libs-1:1.14.10-3.fc40.s3 100% |   9.1 MiB/s | 158.5 KiB |  00m00s
[ 34/285] qt-common-1:4.8.7-76.fc40.noa 100% |   1.0 MiB/s |   7.3 KiB |  00m00s
[ 35/285] qt-x11-1:4.8.7-76.fc40.s390x  100% | 196.3 MiB/s |  13.7 MiB |  00m00s
[ 36/285] qt-settings-0:39.1-6.fc40.noa 100% | 711.3 KiB/s |  10.0 KiB |  00m00s
[ 37/285] python3-0:3.12.1-4.fc40.s390x 100% |   5.2 MiB/s |  26.6 KiB |  00m00s
[ 38/285] glib2-0:2.79.1-1.fc40.s390x   100% |  87.9 MiB/s |   3.0 MiB |  00m00s
[ 39/285] gl-manpages-0:1.1-31.20190306 100% |  80.1 MiB/s |   1.0 MiB |  00m00s
[ 40/285] mesa-libGLU-0:9.0.3-4.fc40.s3 100% |  18.3 MiB/s | 187.1 KiB |  00m00s
[ 41/285] libglvnd-opengl-1:1.7.0-4.fc4 100% |   7.5 MiB/s |  53.7 KiB |  00m00s
[ 42/285] python3-libs-0:3.12.1-4.fc40. 100% | 226.9 MiB/s |   8.8 MiB |  00m00s
[ 43/285] cmake-filesystem-0:3.28.2-1.f 100% |   1.6 MiB/s |  17.5 KiB |  00m00s
[ 44/285] guile30-0:3.0.7-12.fc40.s390x 100% | 197.3 MiB/s |   8.1 MiB |  00m00s
[ 45/285] libedit-devel-0:3.1-50.202308 100% |   1.5 MiB/s |  40.2 KiB |  00m00s
[ 46/285] llvm-googletest-0:17.0.6-6.fc 100% |  53.5 MiB/s | 383.6 KiB |  00m00s
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[ 48/285] llvm-test-0:17.0.6-6.fc40.s39 100% |  24.7 MiB/s | 758.1 KiB |  00m00s
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[213/285] lua-posix-0:36.2.1-3.fc39.s39 100% |  26.3 MiB/s | 134.6 KiB |  00m00s
[214/285] lua-0:5.4.6-5.fc40.s390x      100% |  27.7 MiB/s | 198.6 KiB |  00m00s
[215/285] emacs-filesystem-1:29.2-3.fc4 100% |   2.5 MiB/s |   7.8 KiB |  00m00s
[216/285] vim-filesystem-2:9.1.031-2.fc 100% |   5.7 MiB/s |  17.4 KiB |  00m00s
[217/285] pixman-0:0.43.0-3.fc40.s390x  100% |  55.9 MiB/s | 228.8 KiB |  00m00s
[218/285] flexiblas-0:3.4.1-3.fc40.s390 100% |   6.2 MiB/s |  25.4 KiB |  00m00s
[219/285] flexiblas-openblas-openmp-0:3 100% |   8.9 MiB/s |  18.2 KiB |  00m00s
[220/285] qt5-qtbase-gui-0:5.15.12-4.fc 100% | 176.3 MiB/s |   6.9 MiB |  00m00s
[221/285] qt5-qtbase-0:5.15.12-4.fc40.s 100% |  87.8 MiB/s |   3.8 MiB |  00m00s
[222/285] libtool-ltdl-0:2.4.7-10.fc40. 100% |   5.2 MiB/s |  37.1 KiB |  00m00s
[223/285] glx-utils-0:9.0.0-6.fc40.s390 100% |  14.1 MiB/s |  72.2 KiB |  00m00s
[224/285] libdrm-0:2.4.120-3.fc40.s390x 100% |  20.1 MiB/s | 102.8 KiB |  00m00s
[225/285] libinput-0:1.25.0-3.fc40.s390 100% |  28.5 MiB/s | 204.2 KiB |  00m00s
[226/285] python3-numpy-1:1.26.2-4.fc40 100% | 132.4 MiB/s |   6.9 MiB |  00m00s
[227/285] libxkbcommon-0:1.6.0-2.fc40.s 100% |  18.3 MiB/s | 149.5 KiB |  00m00s
[228/285] libxkbcommon-x11-0:1.6.0-2.fc 100% |   2.4 MiB/s |  22.0 KiB |  00m00s
[229/285] mesa-libgbm-0:24.0.0-1.fc40.s 100% |   9.4 MiB/s |  47.9 KiB |  00m00s
[230/285] xcb-util-image-0:0.4.1-5.fc40 100% |   4.8 MiB/s |  19.5 KiB |  00m00s
[231/285] xcb-util-keysyms-0:0.4.1-5.fc 100% |   2.8 MiB/s |  14.2 KiB |  00m00s
[232/285] xcb-util-renderutil-0:0.3.10- 100% |   4.1 MiB/s |  17.0 KiB |  00m00s
[233/285] xcb-util-wm-0:0.4.2-5.fc40.s3 100% |   6.3 MiB/s |  32.1 KiB |  00m00s
[234/285] double-conversion-0:3.3.0-3.f 100% |  10.3 MiB/s |  52.8 KiB |  00m00s
[235/285] libproxy-0:0.5.3-5.fc40.s390x 100% |   9.3 MiB/s |  47.8 KiB |  00m00s
[236/285] pcre2-utf16-0:10.42-2.fc40.2. 100% |  46.0 MiB/s | 235.7 KiB |  00m00s
[237/285] qt5-qtbase-common-0:5.15.12-4 100% |   3.9 MiB/s |  11.9 KiB |  00m00s
[238/285] crypto-policies-scripts-0:202 100% |  20.5 MiB/s | 104.9 KiB |  00m00s
[239/285] pcre2-utf32-0:10.42-2.fc40.2. 100% |  36.2 MiB/s | 222.5 KiB |  00m00s
[240/285] nspr-0:4.35.0-20.fc40.s390x   100% |  29.0 MiB/s | 148.3 KiB |  00m00s
[241/285] nss-sysinit-0:3.97.0-1.fc40.s 100% |   3.6 MiB/s |  18.6 KiB |  00m00s
[242/285] nss-softokn-0:3.97.0-1.fc40.s 100% |  60.1 MiB/s | 430.8 KiB |  00m00s
[243/285] nss-util-0:3.97.0-1.fc40.s390 100% |  14.8 MiB/s |  90.8 KiB |  00m00s
[244/285] junit-1:4.13.2-4.fc40.noarch  100% |  67.7 MiB/s | 346.6 KiB |  00m00s
[245/285] byte-buddy-agent-0:1.14.2-6.f 100% |  35.0 MiB/s | 215.0 KiB |  00m00s
[246/285] opentest4j-0:1.3.0-4.fc40.noa 100% |   6.4 MiB/s |  26.4 KiB |  00m00s
[247/285] objenesis-0:3.3-7.fc40.noarch 100% |  18.8 MiB/s | 115.6 KiB |  00m00s
[248/285] libwayland-server-0:1.22.0-3. 100% |  10.3 MiB/s |  42.1 KiB |  00m00s
[249/285] libXxf86vm-0:1.1.5-6.fc40.s39 100% |   3.5 MiB/s |  17.9 KiB |  00m00s
[250/285] libxshmfence-0:1.3.2-3.fc40.s 100% |   2.9 MiB/s |  11.9 KiB |  00m00s
[251/285] byte-buddy-0:1.14.2-6.fc40.no 100% | 118.4 MiB/s |   3.2 MiB |  00m00s
[252/285] libwayland-client-0:1.22.0-3. 100% |   6.6 MiB/s |  33.6 KiB |  00m00s
[253/285] libsepol-devel-0:3.6-3.fc40.s 100% |   9.8 MiB/s |  40.1 KiB |  00m00s
[254/285] xkeyboard-config-0:2.40-3.fc4 100% |  99.5 MiB/s | 916.5 KiB |  00m00s
[255/285] duktape-0:2.7.0-7.fc40.s390x  100% |  42.4 MiB/s | 173.6 KiB |  00m00s
[256/285] mesa-libglapi-0:24.0.0-1.fc40 100% |   4.3 MiB/s |  79.0 KiB |  00m00s
[257/285] libevdev-0:1.13.1-4.fc40.s390 100% |   8.5 MiB/s |  43.3 KiB |  00m00s
[258/285] libwacom-0:2.9.0-3.fc40.s390x 100% |   7.0 MiB/s |  42.9 KiB |  00m00s
[259/285] mtdev-0:1.1.6-8.fc40.s390x    100% |   4.2 MiB/s |  21.7 KiB |  00m00s
[260/285] hamcrest-0:2.2-14.fc40.noarch 100% |  23.4 MiB/s | 120.0 KiB |  00m00s
[261/285] objectweb-asm-0:9.6-3.fc40.no 100% |  70.7 MiB/s | 362.1 KiB |  00m00s
[262/285] gettext-envsubst-0:0.22-4.fc4 100% |   6.0 MiB/s |  36.9 KiB |  00m00s
[263/285] xcb-util-0:0.4.1-5.fc40.s390x 100% |   3.6 MiB/s |  18.6 KiB |  00m00s
[264/285] openblas-0:0.3.26-1.fc40.s390 100% |   7.5 MiB/s |  38.4 KiB |  00m00s
[265/285] javapackages-tools-0:6.2.0-8. 100% |   7.9 MiB/s |  32.4 KiB |  00m00s
[266/285] nss-softokn-freebl-0:3.97.0-1 100% |  60.2 MiB/s | 370.1 KiB |  00m00s
[267/285] libgudev-0:238-5.fc40.s390x   100% |   6.7 MiB/s |  34.1 KiB |  00m00s
[268/285] libwacom-data-0:2.9.0-3.fc40. 100% |  28.8 MiB/s | 118.0 KiB |  00m00s
[269/285] Lmod-0:8.7.32-3.fc40.s390x    100% |  37.9 MiB/s | 232.6 KiB |  00m00s
[270/285] openblas-openmp-0:0.3.26-1.fc 100% | 117.5 MiB/s |   4.3 MiB |  00m00s
[271/285] lua-filesystem-0:1.8.0-11.fc4 100% |   3.3 MiB/s |  33.3 KiB |  00m00s
[272/285] lua-json-0:1.3.4-6.fc40.noarc 100% |   6.3 MiB/s |  25.9 KiB |  00m00s
[273/285] lua-term-0:0.08-3.fc40.s390x  100% |   2.6 MiB/s |  15.7 KiB |  00m00s
[274/285] procps-ng-0:4.0.4-3.fc40.s390 100% |  46.9 MiB/s | 384.1 KiB |  00m00s
[275/285] tcl-1:8.6.13-2.fc40.s390x     100% | 123.9 MiB/s |   1.1 MiB |  00m00s
[276/285] lua-lpeg-0:1.0.2-13.fc40.s390 100% |  13.3 MiB/s |  68.0 KiB |  00m00s
[277/285] pyproject-rpm-macros-0:1.12.0 100% |   8.1 MiB/s |  41.4 KiB |  00m00s
[278/285] python-rpm-macros-0:3.12-7.fc 100% |   4.4 MiB/s |  18.0 KiB |  00m00s
[279/285] python3-rpm-generators-0:14-1 100% |   7.2 MiB/s |  29.6 KiB |  00m00s
[280/285] python3-rpm-macros-0:3.12-7.f 100% |   4.2 MiB/s |  12.8 KiB |  00m00s
[281/285] gcc-plugin-annobin-0:14.0.1-0 100% |   8.4 MiB/s |  34.4 KiB |  00m00s
[282/285] cmake-rpm-macros-0:3.28.2-1.f 100% |   4.2 MiB/s |  17.0 KiB |  00m00s
[283/285] annobin-plugin-gcc-0:12.38-1. 100% |  66.7 MiB/s | 956.3 KiB |  00m00s
[284/285] annobin-docs-0:12.38-1.fc40.n 100% |  29.2 MiB/s |  89.6 KiB |  00m00s
[285/285] java-17-openjdk-headless-1:17 100% | 246.7 MiB/s |  41.7 MiB |  00m00s
--------------------------------------------------------------------------------
[285/285] Total                         100% | 228.7 MiB/s | 421.5 MiB |  00m02s
Running transaction
[  1/287] Verify package files          100% | 211.0   B/s | 285.0   B |  00m01s
>>> Running pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch
>>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch
>>> Running pre-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.
>>> Stop pre-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc4
>>> Running pre-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.402.b
>>> Stop pre-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.402.b06-
[  2/287] Prepare transaction           100% | 989.0   B/s | 285.0   B |  00m00s
[  3/287] Installing xorg-x11-proto-dev 100% | 195.1 MiB/s |   1.8 MiB |  00m00s
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[  5/287] Installing boost-system-0:1.8 100% |   0.0   B/s |  17.1 KiB |  00m00s
[  6/287] Installing libicu-0:74.2-1.fc 100% | 292.2 MiB/s |  35.4 MiB |  00m00s
[  7/287] Installing boost-chrono-0:1.8 100% |   0.0   B/s |  42.2 KiB |  00m00s
[  8/287] Installing cmake-filesystem-0 100% |   7.0 MiB/s |   7.1 KiB |  00m00s
[  9/287] Installing boost-thread-0:1.8 100% | 137.8 MiB/s | 141.1 KiB |  00m00s
[ 10/287] Installing nspr-0:4.35.0-20.f 100% | 178.6 MiB/s | 365.9 KiB |  00m00s
[ 11/287] Installing expat-0:2.5.0-5.fc 100% | 148.7 MiB/s | 304.4 KiB |  00m00s
[ 12/287] Installing libpng-2:1.6.40-3. 100% | 248.9 MiB/s | 254.8 KiB |  00m00s
[ 13/287] Installing libICE-0:1.1.1-3.f 100% | 189.8 MiB/s | 194.3 KiB |  00m00s
[ 14/287] Installing libglvnd-1:1.7.0-4 100% | 294.6 MiB/s | 905.1 KiB |  00m00s
[ 15/287] Installing libSM-0:1.2.4-3.fc 100% | 104.0 MiB/s | 106.5 KiB |  00m00s
[ 16/287] Installing nss-util-0:3.97.0- 100% | 237.3 MiB/s | 243.0 KiB |  00m00s
[ 17/287] Installing libdrm-0:2.4.120-3 100% | 135.8 MiB/s | 278.2 KiB |  00m00s
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[ 19/287] Installing libX11-xcb-0:1.8.7 100% |   0.0   B/s |  15.7 KiB |  00m00s
[ 20/287] Installing zlib-ng-compat-dev 100% | 102.0 MiB/s | 104.5 KiB |  00m00s
[ 21/287] Installing libICE-devel-0:1.1 100% | 257.2 MiB/s | 263.4 KiB |  00m00s
[ 22/287] Installing boost-regex-0:1.83 100% | 148.0 MiB/s | 303.1 KiB |  00m00s
[ 23/287] Installing python-rpm-macros- 100% |   0.0   B/s |  22.8 KiB |  00m00s
[ 24/287] Installing libgfortran-0:14.0 100% | 310.2 MiB/s |   2.2 MiB |  00m00s
[ 25/287] Installing boost-context-0:1. 100% |   0.0   B/s |  17.3 KiB |  00m00s
[ 26/287] Installing boost-atomic-0:1.8 100% |   0.0   B/s |  21.7 KiB |  00m00s
[ 27/287] Installing boost-filesystem-0 100% | 148.1 MiB/s | 151.7 KiB |  00m00s
[ 28/287] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[ 29/287] Installing libmpc-0:1.3.1-5.f 100% | 169.9 MiB/s | 174.0 KiB |  00m00s
[ 30/287] Installing alsa-lib-0:1.2.11- 100% | 216.0 MiB/s |   1.5 MiB |  00m00s
[ 31/287] Installing dbus-libs-1:1.14.1 100% | 194.3 MiB/s | 398.0 KiB |  00m00s
[ 32/287] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 33/287] Installing libglvnd-opengl-1: 100% | 106.4 MiB/s | 218.0 KiB |  00m00s
[ 34/287] Installing libicu-devel-0:74. 100% | 256.4 MiB/s |   5.6 MiB |  00m00s
[ 35/287] Installing libevdev-0:1.13.1- 100% | 120.1 MiB/s | 123.0 KiB |  00m00s
[ 36/287] Installing mesa-libglapi-0:24 100% | 350.1 MiB/s | 358.5 KiB |  00m00s
[ 37/287] Installing libxshmfence-0:1.3 100% |   0.0   B/s |  16.0 KiB |  00m00s
[ 38/287] Installing libwayland-server- 100% |  89.4 MiB/s |  91.5 KiB |  00m00s
[ 39/287] Installing pcre2-utf16-0:10.4 100% | 300.1 MiB/s | 614.7 KiB |  00m00s
[ 40/287] Installing lua-posix-0:36.2.1 100% | 152.6 MiB/s | 624.8 KiB |  00m00s
[ 41/287] Installing lua-0:5.4.6-5.fc40 100% | 204.5 MiB/s | 628.4 KiB |  00m00s
[ 42/287] Installing copy-jdk-configs-0 100% |   0.0   B/s |  21.0 KiB |  00m00s
[ 43/287] Installing gettext-libs-0:0.2 100% | 252.8 MiB/s |   1.0 MiB |  00m00s
[ 44/287] Installing graphite2-0:1.3.14 100% | 204.6 MiB/s | 209.6 KiB |  00m00s
[ 45/287] Installing tzdata-java-0:2023 100% |   0.0   B/s | 101.9 KiB |  00m00s
[ 46/287] Installing lksctp-tools-0:1.0 100% | 135.1 MiB/s | 276.6 KiB |  00m00s
[ 47/287] Installing libXau-0:1.0.11-6. 100% |  66.5 MiB/s |  68.1 KiB |  00m00s
[ 48/287] Installing libxcb-0:1.16-4.fc 100% | 237.1 MiB/s |   1.2 MiB |  00m00s
[ 49/287] Installing mesa-libgbm-0:24.0 100% |  72.2 MiB/s |  73.9 KiB |  00m00s
[ 50/287] Installing scotch-0:7.0.4-3.f 100% | 200.9 MiB/s | 822.8 KiB |  00m00s
[ 51/287] Installing boost-date-time-0: 100% |   0.0   B/s |  17.1 KiB |  00m00s
[ 52/287] Installing boost-container-0: 100% |  68.5 MiB/s |  70.2 KiB |  00m00s
[ 53/287] Installing libedit-0:3.1-50.2 100% | 137.4 MiB/s | 281.4 KiB |  00m00s
[ 54/287] Installing llvm-libs-0:17.0.6 100% | 364.7 MiB/s | 176.2 MiB |  00m00s
[ 55/287] Installing libstdc++-devel-0: 100% | 314.3 MiB/s |  14.5 MiB |  00m00s
[ 56/287] Installing qt-settings-0:39.1 100% |   0.0   B/s |   1.7 KiB |  00m00s
[ 57/287] Installing boost-json-0:1.83. 100% | 178.2 MiB/s | 364.9 KiB |  00m00s
[ 58/287] Installing boost-wave-0:1.83. 100% | 224.9 MiB/s | 690.9 KiB |  00m00s
[ 59/287] Installing scotch-devel-0:7.0 100% |  97.1 MiB/s |  99.5 KiB |  00m00s
[ 60/287] Installing xcb-util-keysyms-0 100% |   0.0   B/s |  17.7 KiB |  00m00s
[ 61/287] Installing xcb-util-renderuti 100% |   0.0   B/s |  29.7 KiB |  00m00s
[ 62/287] Installing xcb-util-wm-0:0.4. 100% | 104.6 MiB/s | 107.1 KiB |  00m00s
[ 63/287] Installing xcb-util-0:0.4.1-5 100% |  34.7 MiB/s |  35.6 KiB |  00m00s
[ 64/287] Installing xcb-util-image-0:0 100% |   0.0   B/s |  27.4 KiB |  00m00s
[ 65/287] Installing libXau-devel-0:1.0 100% |   2.0 MiB/s |   8.2 KiB |  00m00s
[ 66/287] Installing libxcb-devel-0:1.1 100% |  63.7 MiB/s |   3.1 MiB |  00m00s
[ 67/287] Installing graphite2-devel-0: 100% |   0.0   B/s |  50.6 KiB |  00m00s
[ 68/287] Installing lua-term-0:0.08-3. 100% |  28.1 MiB/s |  28.7 KiB |  00m00s
[ 69/287] Installing mesa-libGLU-0:9.0. 100% | 200.3 MiB/s | 410.3 KiB |  00m00s
[ 70/287] Installing pyproject-rpm-macr 100% |  98.4 MiB/s | 100.8 KiB |  00m00s
[ 71/287] Installing avahi-libs-0:0.8-2 100% | 179.9 MiB/s | 184.2 KiB |  00m00s
[ 72/287] Installing cpp-0:14.0.1-0.4.f 100% | 285.2 MiB/s |  25.4 MiB |  00m00s
[ 73/287] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB |  00m00s
[ 74/287] Installing boost-fiber-0:1.83 100% |  85.0 MiB/s |  87.1 KiB |  00m00s
[ 75/287] Installing boost-log-0:1.83.0 100% | 257.6 MiB/s |   1.5 MiB |  00m00s
[ 76/287] Installing boost-coroutine-0: 100% |   0.0   B/s |  21.9 KiB |  00m00s
[ 77/287] Installing boost-graph-0:1.83 100% | 180.8 MiB/s | 370.2 KiB |  00m00s
[ 78/287] Installing libpng-devel-2:1.6 100% | 289.4 MiB/s | 889.0 KiB |  00m00s
[ 79/287] Installing nss-softokn-freebl 100% | 258.1 MiB/s | 793.0 KiB |  00m00s
[ 80/287] Installing nss-softokn-0:3.97 100% | 343.0 MiB/s |   2.1 MiB |  00m00s
[ 81/287] Installing boost-locale-0:1.8 100% | 207.1 MiB/s | 636.1 KiB |  00m00s
[ 82/287] Installing boost-type_erasure 100% |  61.4 MiB/s |  62.8 KiB |  00m00s
[ 83/287] Installing boost-timer-0:1.83 100% |   0.0   B/s |  25.8 KiB |  00m00s
[ 84/287] Installing annobin-docs-0:12. 100% |   0.0   B/s |  96.6 KiB |  00m00s
[ 85/287] Installing lua-lpeg-0:1.0.2-1 100% | 174.2 MiB/s | 178.4 KiB |  00m00s
[ 86/287] Installing lua-json-0:1.3.4-6 100% |  61.6 MiB/s |  63.1 KiB |  00m00s
[ 87/287] Installing tcl-1:8.6.13-2.fc4 100% | 244.8 MiB/s |   4.4 MiB |  00m00s
[ 88/287] Installing procps-ng-0:4.0.4- 100% | 232.2 MiB/s |   1.2 MiB |  00m00s
[ 89/287] Installing lua-filesystem-0:1 100% |  65.3 MiB/s |  66.8 KiB |  00m00s
[ 90/287] Installing Lmod-0:8.7.32-3.fc 100% |  90.3 MiB/s |   1.3 MiB |  00m00s
>>> Running post-install scriptlet: Lmod-0:8.7.32-3.fc40.s390x
>>> Stop post-install scriptlet: Lmod-0:8.7.32-3.fc40.s390x
[ 91/287] Installing libwacom-data-0:2. 100% |  66.3 MiB/s | 678.8 KiB |  00m00s
[ 92/287] Installing openblas-0:0.3.26- 100% |  95.5 MiB/s |  97.8 KiB |  00m00s
[ 93/287] Installing openblas-openmp-0: 100% | 303.2 MiB/s |  15.2 MiB |  00m00s
[ 94/287] Installing flexiblas-0:3.4.1- 100% |   0.0   B/s |  47.9 KiB |  00m00s
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[ 96/287] Installing flexiblas-netlib-0 100% | 302.8 MiB/s |  11.5 MiB |  00m00s
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[116/287] Installing libselinux-devel-0 100% |  31.4 MiB/s | 160.6 KiB |  00m00s
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[119/287] Installing unixODBC-0:2.3.12- 100% | 183.7 MiB/s |   1.3 MiB |  00m00s
[120/287] Installing pixman-0:0.43.0-3. 100% | 289.8 MiB/s | 593.5 KiB |  00m00s
[121/287] Installing vim-filesystem-2:9 100% |   4.6 MiB/s |   4.7 KiB |  00m00s
[122/287] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
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[125/287] Installing kernel-headers-0:6 100% | 181.9 MiB/s |   6.4 MiB |  00m00s
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[129/287] Installing nettle-0:3.9.1-6.f 100% | 207.4 MiB/s | 849.4 KiB |  00m00s
[130/287] Installing gnutls-0:3.8.3-2.f 100% | 258.3 MiB/s |   3.1 MiB |  00m00s
[131/287] Installing glib2-0:2.79.1-1.f 100% | 305.8 MiB/s |  14.7 MiB |  00m00s
[132/287] Installing qt-common-1:4.8.7- 100% |  40.4 KiB/s | 124.0   B |  00m00s
>>> Running pre-install scriptlet: qt-1:4.8.7-76.fc40.s390x
>>> Stop pre-install scriptlet: qt-1:4.8.7-76.fc40.s390x
[133/287] Installing qt-1:4.8.7-76.fc40 100% | 284.7 MiB/s |  19.1 MiB |  00m00s
>>> Running post-install scriptlet: qt-1:4.8.7-76.fc40.s390x
>>> Stop post-install scriptlet: qt-1:4.8.7-76.fc40.s390x
[134/287] Installing cups-libs-1:2.4.7- 100% | 177.8 MiB/s | 728.3 KiB |  00m00s
[135/287] Installing libproxy-0:0.5.3-5 100% | 118.3 MiB/s | 121.2 KiB |  00m00s
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>>> Running pre-install scriptlet: qt5-qtbase-0:5.15.12-4.fc40.s390x
>>> Stop pre-install scriptlet: qt5-qtbase-0:5.15.12-4.fc40.s390x
[137/287] Installing qt5-qtbase-0:5.15. 100% | 227.1 MiB/s |  10.9 MiB |  00m00s
>>> Running post-install scriptlet: qt5-qtbase-0:5.15.12-4.fc40.s390x
>>> Stop post-install scriptlet: qt5-qtbase-0:5.15.12-4.fc40.s390x
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[139/287] Installing google-noto-fonts- 100% |   0.0   B/s |  18.1 KiB |  00m00s
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[145/287] Installing libmng-0:2.0.3-21. 100% | 279.3 MiB/s | 571.9 KiB |  00m00s
[146/287] Installing cliquer-libs-0:1.2 100% |  75.2 MiB/s |  77.0 KiB |  00m00s
[147/287] Installing libnauty-0:2.8.8-3 100% | 337.1 MiB/s |   5.7 MiB |  00m00s
[148/287] Installing libwebp-0:1.3.2-4. 100% | 215.3 MiB/s | 661.4 KiB |  00m00s
[149/287] Installing liblerc-0:4.0.0-6. 100% | 264.2 MiB/s | 270.6 KiB |  00m00s
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[151/287] Installing libtiff-0:4.6.0-2. 100% | 244.2 MiB/s |   1.2 MiB |  00m00s
[152/287] Installing xz-devel-0:5.4.6-1 100% | 126.9 MiB/s | 259.9 KiB |  00m00s
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[154/287] Installing libfontenc-0:1.1.7 100% |   0.0   B/s |  69.9 KiB |  00m00s
[155/287] Installing gsl-0:2.7.1-7.fc40 100% | 282.7 MiB/s |   3.7 MiB |  00m00s
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[158/287] Installing libedit-devel-0:3. 100% |  16.3 MiB/s |  66.8 KiB |  00m00s
[159/287] Installing tzdata-0:2023d-3.f 100% |  56.1 MiB/s |   1.9 MiB |  00m00s
[160/287] Installing python-pip-wheel-0 100% | 506.6 MiB/s |   1.5 MiB |  00m00s
[161/287] Installing mpdecimal-0:2.5.1- 100% |  37.4 MiB/s | 229.7 KiB |  00m00s
[162/287] Installing libb2-0:0.98.1-11. 100% |  10.5 MiB/s |  43.1 KiB |  00m00s
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[165/287] Installing llvm-0:17.0.6-6.fc 100% | 362.0 MiB/s | 163.6 MiB |  00m00s
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[171/287] Installing llvm-test-0:17.0.6 100% | 240.7 MiB/s |   2.6 MiB |  00m00s
[172/287] Installing python3-numpy-1:1. 100% | 328.4 MiB/s |  42.4 MiB |  00m00s
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>>> Running post-install scriptlet: nss-0:3.97.0-1.fc40.s390x
>>> Stop post-install scriptlet: nss-0:3.97.0-1.fc40.s390x
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>>> Running post-install scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc4
>>> Stop post-install scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc40.s
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[179/287] Installing libwacom-0:2.9.0-3 100% |  93.9 MiB/s |  96.2 KiB |  00m00s
[180/287] Installing libinput-0:1.25.0- 100% |  79.6 MiB/s | 570.4 KiB |  00m00s
>>> Running post-install scriptlet: libinput-0:1.25.0-3.fc40.s390x
>>> Stop post-install scriptlet: libinput-0:1.25.0-3.fc40.s390x
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[191/287] Installing boost-iostreams-0: 100% |  92.8 MiB/s |  95.0 KiB |  00m00s
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[198/287] Installing jsoncpp-0:1.9.5-7. 100% |  60.8 MiB/s | 249.1 KiB |  00m00s
>>> Running pre-install scriptlet: xml-common-0:0.6.3-63.fc40.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-63.fc40.noarch
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[204/287] Installing guile30-0:3.0.7-12 100% | 353.8 MiB/s |  51.7 MiB |  00m00s
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[206/287] Installing gcc-0:14.0.1-0.4.f 100% | 315.5 MiB/s |  76.0 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[207/287] Installing gcc-c++-0:14.0.1-0 100% | 272.7 MiB/s |  28.6 MiB |  00m00s
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[220/287] Installing libXfixes-0:6.0.1- 100% |   0.0   B/s |  31.5 KiB |  00m00s
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[223/287] Installing libXrandr-0:1.5.4- 100% |   0.0   B/s |  56.8 KiB |  00m00s
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[225/287] Installing harfbuzz-0:8.3.0-5 100% | 264.1 MiB/s |   2.6 MiB |  00m00s
[226/287] Installing freetype-0:2.13.2- 100% | 228.7 MiB/s | 936.7 KiB |  00m00s
[227/287] Installing fontconfig-0:2.15. 100% | 802.1 KiB/s | 819.7 KiB |  00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-3.fc40.s390x
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-3.fc40.s390x
[228/287] Installing java-1.8.0-openjdk 100% | 334.9 MiB/s | 105.2 MiB |  00m00s
>>> Running post-install scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.402.b06-
>>> Stop post-install scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.402.b06-1.f
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[235/287] Installing junit-1:4.13.2-4.f 100% | 406.4 MiB/s | 416.2 KiB |  00m00s
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[238/287] Installing mockito-0:5.8.0-3. 100% | 344.0 MiB/s | 704.4 KiB |  00m00s
[239/287] Installing jacop-0:4.9.0-4.fc 100% | 454.7 MiB/s |   1.8 MiB |  00m00s
[240/287] Installing libXft-0:2.3.8-6.f 100% | 169.7 MiB/s | 173.8 KiB |  00m00s
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[242/287] Installing ttmkfdir-0:3.0.9-7 100% | 124.3 MiB/s | 127.3 KiB |  00m00s
[243/287] Installing xorg-x11-fonts-Typ 100% |  18.8 MiB/s | 865.6 KiB |  00m00s
>>> Running post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-38.fc40.noarch
>>> Stop post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-38.fc40.noarch
[244/287] Installing harfbuzz-icu-0:8.3 100% |  15.7 MiB/s |  16.1 KiB |  00m00s
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[253/287] Installing mesa-libGL-0:24.0. 100% | 192.4 MiB/s | 591.1 KiB |  00m00s
[254/287] Installing qt-x11-1:4.8.7-76. 100% | 305.1 MiB/s |  39.4 MiB |  00m00s
[255/287] Installing glx-utils-0:9.0.0- 100% | 222.5 MiB/s | 455.6 KiB |  00m00s
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[257/287] Installing gecode-0:6.2.0-13. 100% | 337.2 MiB/s |  15.5 MiB |  00m00s
[258/287] Installing mp-0:3.1.0-45.2020 100% | 264.9 MiB/s |   3.4 MiB |  00m00s
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[261/287] Installing coin-or-Cbc-0:2.10 100% | 268.0 MiB/s |   2.4 MiB |  00m00s
[262/287] Installing coin-or-lemon-0:1. 100% | 267.7 MiB/s | 274.1 KiB |  00m00s
[263/287] Installing libXt-0:1.3.0-3.fc 100% | 155.8 MiB/s | 478.7 KiB |  00m00s
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[265/287] Installing libXcomposite-0:0. 100% |   0.0   B/s |  45.9 KiB |  00m00s
[266/287] Installing java-1.8.0-openjdk 100% | 127.2 MiB/s |   1.3 MiB |  00m00s
>>> Running post-install scriptlet: java-1.8.0-openjdk-1:1.8.0.402.b06-1.fc40.s3
>>> Stop post-install scriptlet: java-1.8.0-openjdk-1:1.8.0.402.b06-1.fc40.s390x
[267/287] Installing libglvnd-core-deve 100% |  40.1 MiB/s |  41.1 KiB |  00m00s
[268/287] Installing libglvnd-devel-1:1 100% | 353.4 MiB/s |   2.1 MiB |  00m00s
[269/287] Installing llvm-static-0:17.0 100% | 392.5 MiB/s | 274.0 MiB |  00m01s
[270/287] Installing llvm-googletest-0: 100% | 288.3 MiB/s |   2.3 MiB |  00m00s
[271/287] Installing gl-manpages-0:1.1- 100% |  58.7 MiB/s |   1.1 MiB |  00m00s
[272/287] Installing mesa-libGLU-devel- 100% |   0.0   B/s |  17.5 KiB |  00m00s
[273/287] Installing bzip2-devel-0:1.0. 100% | 303.5 MiB/s | 310.7 KiB |  00m00s
[274/287] Installing harfbuzz-devel-0:8 100% | 340.8 MiB/s |   5.1 MiB |  00m00s
[275/287] Installing freetype-devel-0:2 100% | 357.1 MiB/s |   7.9 MiB |  00m00s
[276/287] Installing fontconfig-devel-0 100% |  37.1 MiB/s | 151.9 KiB |  00m00s
[277/287] Installing libXft-devel-0:2.3 100% |   6.2 MiB/s |  44.3 KiB |  00m00s
[278/287] Installing qt-devel-1:4.8.7-7 100% | 222.6 MiB/s |  38.5 MiB |  00m00s
[279/287] Installing llvm-devel-0:17.0. 100% | 248.1 MiB/s |  23.8 MiB |  00m00s
>>> Running post-install scriptlet: llvm-devel-0:17.0.6-6.fc40.s390x
>>> Stop post-install scriptlet: llvm-devel-0:17.0.6-6.fc40.s390x
[280/287] Installing java-1.8.0-openjdk 100% | 363.7 MiB/s |  38.6 MiB |  00m00s
>>> Running post-install scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.402.b06-1.f
>>> Stop post-install scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.402.b06-1.fc40
[281/287] Installing coin-or-lemon-deve 100% | 279.7 MiB/s |   2.5 MiB |  00m00s
[282/287] Installing annobin-plugin-gcc 100% |  85.9 MiB/s | 968.1 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[283/287] Installing gcc-plugin-annobin 100% |   1.5 MiB/s |  58.4 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[284/287] Installing boost-devel-0:1.83 100% | 233.2 MiB/s | 145.8 MiB |  00m01s
[285/287] Installing python3-devel-0:3. 100% | 141.7 MiB/s |   1.3 MiB |  00m00s
[286/287] Installing python3-setuptools 100% | 233.8 MiB/s |   7.2 MiB |  00m00s
[287/287] Installing libstdc++-static-0 100% |  14.2 MiB/s |   7.1 MiB |  00m01s
>>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch
>>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch
>>> Running post-transaction scriptlet: crypto-policies-scripts-0:20240201-1.git
>>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20240201-1.git9f5
>>> Running post-transaction scriptlet: nss-0:3.97.0-1.fc40.s390x
>>> Stop post-transaction scriptlet: nss-0:3.97.0-1.fc40.s390x
>>> Running post-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1
>>> Stop post-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-3.fc40.s390x
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-3.fc40.s390x
>>> Running post-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.402.
>>> Stop post-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.402.b06
>>> Running post-transaction scriptlet: java-1.8.0-openjdk-1:1.8.0.402.b06-1.fc4
>>> Stop post-transaction scriptlet: java-1.8.0-openjdk-1:1.8.0.402.b06-1.fc40.s
>>> Running post-transaction scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.402.b06
>>> Stop post-transaction scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.402.b06-1.
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.s390x
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-39.fc40.s390x
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.s390x
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.s390x
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.s390x
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.s390x
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.s390x
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.s390x
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-3.fc40.s390x
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-3.fc40.s390x
Warning: skipped PGP checks for 285 package(s).
Finish: build setup for seqan-1.4.2-54.fc40.src.rpm
Start: rpmbuild seqan-1.4.2-54.fc40.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1706659200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.e5lzVp
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seqan-1.4.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seqan-1.4.2
+ rm -rf /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (seqan-docpath.patch):'
Patch #0 (seqan-docpath.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
patching file util/cmake/SeqAnBuildSystem.cmake
+ echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):'
Patch #1 (seqan-exclude_splazers_fiona_tests.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
patching file core/apps/splazers/CMakeLists.txt
patching file core/apps/fiona/CMakeLists.txt
+ echo 'Patch #2 (seqan-exclude_bstools_test.patch):'
Patch #2 (seqan-exclude_bstools_test.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
patching file extras/apps/bs_tools/CMakeLists.txt
patching file core/apps/samcat/CMakeLists.txt
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';'
+ cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt
+ cp -p core/apps/rabema/LICENSE GPLv3+.txt
+ cp -p LICENSE BSD.txt
+ cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BmBCM8
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-1.4.2
+ mkdir -p build/Release
+ pushd build/Release
~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2
+ SEQAN_OPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC'
+ export 'CXXFLAGS=-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon'
+ CXXFLAGS='-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon'
+ export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -fPIC'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -fPIC'
+ cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 ../..
CMake Warning (dev) at CMakeLists.txt:9 (project):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- The C compiler identification is GNU 14.0.1
-- The CXX compiler identification is GNU 14.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Initializing SeqAn Build System...
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring core
CMake Deprecation Warning at core/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at core/apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps
CMake Deprecation Warning at core/apps/dfi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/dfi
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/dfi/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for include file execinfo.h
-- Looking for include file execinfo.h - found
--   Determined version is 1.4.2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/dfi/CMakeLists.txt:70 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found version "3.12.1") 
CMake Deprecation Warning at core/apps/fiona/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/fiona
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/fiona/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0")  
CMake Deprecation Warning at core/apps/mason/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/mason
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/mason/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/mason/CMakeLists.txt:76 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/micro_razers
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/micro_razers/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/micro_razers/CMakeLists.txt:73 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/pair_align
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/pair_align/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/pair_align/CMakeLists.txt:63 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/rabema/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/rabema
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/rabema/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/rabema/CMakeLists.txt:101 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/razers
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/razers/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/razers/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/razers2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/razers2
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/razers2/CMakeLists.txt:20 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/razers2/CMakeLists.txt:82 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/sak/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/sak
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/sak/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/sak/CMakeLists.txt:78 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/sam2matrix
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/sam2matrix/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/sam2matrix/CMakeLists.txt:66 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/samcat/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/samcat
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/samcat/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/seqan_tcoffee
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/seqan_tcoffee/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/seqan_tcoffee/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/seqcons/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/seqcons
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/seqcons/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/snp_store
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/snp_store/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/snp_store/CMakeLists.txt:86 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/splazers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/splazers
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/splazers/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/stellar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/stellar
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/stellar/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/stellar/CMakeLists.txt:71 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/tree_recon
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  core/apps/tree_recon/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/tree_recon/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring extras
CMake Deprecation Warning at extras/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at extras/apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps
CMake Deprecation Warning at extras/apps/alf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/alf
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/alf/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/breakpoint_calculator/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/breakpoint_calculator
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/breakpoint_calculator/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/breakpoint_calculator/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/bs_tools
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/bs_tools/CMakeLists.txt:20 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/fx_tools
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/fx_tools/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/gustaf
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/gustaf/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/gustaf/CMakeLists.txt:68 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/insegt/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/insegt
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/insegt/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/insegt/CMakeLists.txt:80 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/mason2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/mason2
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/mason2/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/mason2/CMakeLists.txt:155 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring sandbox/jagla/apps/ngs_roi
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/ngs_roi/CMakeLists.txt:20 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/ngs_roi/CMakeLists.txt:101 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/param_chooser
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/param_chooser/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/razers3/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/razers3
-- Performing Test CXX11_FOUND
-- Performing Test CXX11_FOUND - Success
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:27 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2
-- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - found
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:108 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:112 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/rep_sep
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/rep_sep/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/searchjoin
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/searchjoin/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/searchjoin/CMakeLists.txt:69 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/seqan_flexbar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/seqan_flexbar
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/seqan_flexbar/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/seqan_flexbar/CMakeLists.txt:92 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/sgip/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/sgip
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/sgip/CMakeLists.txt:28 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/sgip/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/variant_comp/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/variant_comp
CMake Warning (dev) at util/cmake/FindSeqAn.cmake:164 (EXEC_PROGRAM):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  extras/apps/variant_comp/CMakeLists.txt:19 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/variant_comp/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring docs
CMake Deprecation Warning at docs/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring manual
CMake Deprecation Warning at manual/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
--   Sphinx not found, not building sphinx manual as a test.
-- Configuring sandbox
CMake Deprecation Warning at sandbox/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring util/py_lib
CMake Warning (dev) at util/py_lib/CMakeLists.txt:12 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

--   Python nosetests ('import nose' failed), cannot add tests for seqan.dox
-- Found Java: /usr/bin/java (found version "17.0.10") 
-- Configuring done (2.6s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_SKIP_INSTALL_RPATH
    SEQAN_APP_VERSION
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release
+ make -j1 all
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:274:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 | struct LessSubstringEnd : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:298:27: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  298 | struct LessRange : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:315:25: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  315 | struct LessLex : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1871 |                         TSize size = _sortWotdBucket(
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1977 |                         while (goDown(it)) ;
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   537 |         goBegin(it);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSize = long int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   257 |                         assignSeq(seqs[ds[s] + i], multiFasta[i], format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   504 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = long int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   257 |                         assignSeq(seqs[ds[s] + i], multiFasta[i], format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   504 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  845 |                         switch (options.alphabet)
      |                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:17: note: here
  851 |                 case 1:
      |                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  852 |                         switch (options.alphabet)
      |                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:17: note: here
  858 |                 case 2:
      |                 ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  1%] Linking CXX executable ../../../bin/dfi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Built target dfi
make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23:   required from ‘void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   605 |         valueConstruct(target_begin, getValue(source_begin));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Stats; TValueTarget = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1420 |     _arrayConstructCopyDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Stats; TValueTarget = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<Stats>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Stats>; TSize = int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:843:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   843 |     resize(stats, options.numThreads);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   97 | struct Stats
      |        ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   97 | struct Stats
      |        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘Stats::Stats(const Stats&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20:   required from ‘typename seqan::EnableIf<typename seqan::Or<typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFasta_> >::Type, typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFastq_> >::Type>::Type, int>::Type seqan::read2(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, RecordReader<TFile, SinglePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TIdSpec = Owner<>; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSeqSpec = Owner<>; TFile = std::basic_fstream<char>; TSpec = void; TTag = Tag<TagFasta_>; typename EnableIf<typename Or<typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type, typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type>::Type, int>::Type = int; typename Or<typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type, typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type>::Type = True; typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type = True; typename RemoveConst_<TTag>::Type = Tag<TagFasta_>; typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type = False]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1032 |         appendValue(sequences, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   809 |     if (read2(ids, seqs, readerGenome, Fasta()) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[  3%] Linking CXX executable ../../../bin/compute_gain
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Built target compute_gain
make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1687 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1705 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4212 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4215 |         Dna5String tmp;
      |         ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4235 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4238 |         double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4413 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4416 |         if (options.errorrate != 0 && options.wovsum != 0)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4461 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4463 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 4684 |     for (unsigned i = 0; i < length(store.readSeqStore); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 4689 |         TFionaQgramIndex qgramIndex(prefixes);
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4852 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4854 |         if (inTerm && options.verbosity >= 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5027 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5032 |         resize(store.readSeqStore, readCount);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5479 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5483 |         bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5486 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 5489 |         SEQAN_PROTIMESTART(correction);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5495 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5497 |         if (!loadReadsNoNames(store, options.inputFilename, options))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5561 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5563 |         options.autolevel = (options.fromLevel <= 1);
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5671 |     if (res != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5674 |         if (options.verbosity >= 1 && options.cycles > 1)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag<TTagSpec>) [with TSA = String<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<10> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  4761 |         _qgramFillSuffixArray(indexSA(qgramIndex), indexText(qgramIndex), indexShape(qgramIndex), indexDir(qgramIndex), qgramIndex.bucketMap, getStepSize(qgramIndex), True(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |                     sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  445 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  472 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16:   required from ‘typename seqan::Suffix<T>::Type seqan::suffix(StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, short unsigned int, Tag<Pack_> >; typename Suffix<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   754 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4918 |                 std::cerr << prefix(suffix(store.readSeqStore, front(indexSA(myIndex))), QGRAM_LENGTH) << " - ";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2774 |                                 clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2052 |                 goNextImpl(it, traits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2047 |                 goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3526 |             goNext(iter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   842 |             resize(kmer, length(shape), (TValue)x);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  350 |         *_cur = *src;
      |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/parallel/compiletime_settings.h:33,
                 from /usr/include/c++/14/parallel/parallel.h:37,
                 from /usr/include/c++/14/parallel/base.h:40,
                 from /usr/include/c++/14/parallel/algobase.h:40,
                 from /usr/include/c++/14/bits/stl_algobase.h:2330,
                 from /usr/include/c++/14/string:51:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  4%] Linking CXX executable ../../../bin/fiona
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Built target fiona
make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1687 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1705 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4212 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4215 |         Dna5String tmp;
      |         ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4235 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4238 |         double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4413 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4416 |         if (options.errorrate != 0 && options.wovsum != 0)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4461 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4463 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 4684 |     for (unsigned i = 0; i < length(store.readSeqStore); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 4689 |         TFionaQgramIndex qgramIndex(prefixes);
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4852 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4854 |         if (inTerm && options.verbosity >= 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5027 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5032 |         resize(store.readSeqStore, readCount);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5479 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5483 |         bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5486 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 5489 |         SEQAN_PROTIMESTART(correction);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5495 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5497 |         if (!loadReadsNoNames(store, options.inputFilename, options))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5561 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5563 |         options.autolevel = (options.fromLevel <= 1);
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5671 |     if (res != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5674 |         if (options.verbosity >= 1 && options.cycles > 1)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag<TTagSpec>) [with TSA = String<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<10> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  4761 |         _qgramFillSuffixArray(indexSA(qgramIndex), indexText(qgramIndex), indexShape(qgramIndex), indexDir(qgramIndex), qgramIndex.bucketMap, getStepSize(qgramIndex), True(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |                     sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  445 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  472 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16:   required from ‘typename seqan::Suffix<T>::Type seqan::suffix(StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, short unsigned int, Tag<Pack_> >; typename Suffix<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   754 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4918 |                 std::cerr << prefix(suffix(store.readSeqStore, front(indexSA(myIndex))), QGRAM_LENGTH) << " - ";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2774 |                                 clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2052 |                 goNextImpl(it, traits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2047 |                 goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3526 |             goNext(iter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   842 |             resize(kmer, length(shape), (TValue)x);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  350 |         *_cur = *src;
      |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/parallel/compiletime_settings.h:33,
                 from /usr/include/c++/14/parallel/parallel.h:37,
                 from /usr/include/c++/14/parallel/base.h:40,
                 from /usr/include/c++/14/parallel/algobase.h:40,
                 from /usr/include/c++/14/bits/stl_algobase.h:2330,
                 from /usr/include/c++/14/string:51:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned short, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  6%] Linking CXX executable ../../../bin/fiona_illumina
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  6%] Built target fiona_illumina
make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o -MF CMakeFiles/mason.dir/mason.cpp.o.d -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TScore = Score<int, Tag<LevenshteinDistance_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1565:36:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1565 |     convertMatchesToGlobalAlignment(fragmentStore, Score<int, EditDistance>(), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = long unsigned int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2091 |     return reserve(me, new_capacity, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12:   required from ‘int writeRandomSequence(TRNG&, size_t, const seqan::CharString&, const TOptions&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TOptions = Options<seqan::Tag<IlluminaReads_> >; size_t = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   478 |     reserve(randomSequence, length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   568 |         int ret = writeRandomSequence(rng, options.randomSourceLength, referenceFilename, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1385 |                 String<Dna5Q> read = infix(haplotypeContigsCopy[inst.contigId], inst.beginPos, inst.endPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<char, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from ‘void seqan::insert(String<TValue_, Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = SimpleType<unsigned char, Dna5_>; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String<char, Alloc<> >; TPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   745 |     append(journaledString._insertionBuffer, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   944 |             insert(haplotype[contigId], pos + delta, alt[allele]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2091 |     return reserve(me, new_capacity, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12:   required from ‘void buildHaplotype(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Journaled<seqan::Alloc<> > > >&, seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, seqan::String<seqan::String<Snp> >&, TRNG&, const Options<void>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1008 |     reserve(buffer, options.haplotypeIndelRangeMax);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1322 |             buildHaplotype(haplotypeContigs, fragmentStore, snpSet, rng, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<char, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from ‘void seqan::insert(String<TValue_, Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = SimpleType<unsigned char, Dna5_>; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String<char, Alloc<> >; TPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   745 |     append(journaledString._insertionBuffer, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   944 |             insert(haplotype[contigId], pos + delta, alt[allele]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tempbuf.h:59,
                 from /usr/include/c++/14/bits/stl_algo.h:69,
                 from /usr/include/c++/14/algorithm:61,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >, ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, unsigned long, seqan::AllocateStorage_>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, void, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void>, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void>, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> > >(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘buildReadSimulationInstruction<seqan::Tag<IlluminaReads_>, seqan::Rng<seqan::MersenneTwister>, seqan::Alloc<void> >(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, seqan::Rng<seqan::MersenneTwister>&, unsigned int const&, seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::String<double, seqan::Alloc<void> > const&, unsigned long const&, bool, ModelParameters<seqan::Tag<IlluminaReads_> > const&, Options<seqan::Tag<IlluminaReads_> > const&)int [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551456’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘buildReadSimulationInstruction<seqan::Tag<IlluminaReads_>, seqan::Rng<seqan::MersenneTwister>, seqan::Alloc<void> >(seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<void> >&, seqan::Rng<seqan::MersenneTwister>&, unsigned int const&, seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::String<double, seqan::Alloc<void> > const&, unsigned long const&, bool, ModelParameters<seqan::Tag<IlluminaReads_> > const&, Options<seqan::Tag<IlluminaReads_> > const&)int [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >, ReadSimulationInstruction<seqan::Tag<SangerReads_> >, unsigned long, seqan::AllocateStorage_>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, ReadSimulationInstruction<seqan::Tag<SangerReads_> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, void, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void>, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void>, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> > >(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘buildReadSimulationInstruction<seqan::Tag<SangerReads_>, seqan::Rng<seqan::MersenneTwister>, seqan::Alloc<void> >(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, seqan::Rng<seqan::MersenneTwister>&, unsigned int const&, seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::String<double, seqan::Alloc<void> > const&, unsigned long const&, bool, ModelParameters<seqan::Tag<SangerReads_> > const&, Options<seqan::Tag<SangerReads_> > const&)int [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551456’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘buildReadSimulationInstruction<seqan::Tag<SangerReads_>, seqan::Rng<seqan::MersenneTwister>, seqan::Alloc<void> >(seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<void> >&, seqan::Rng<seqan::MersenneTwister>&, unsigned int const&, seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::String<double, seqan::Alloc<void> > const&, unsigned long const&, bool, ModelParameters<seqan::Tag<SangerReads_> > const&, Options<seqan::Tag<SangerReads_> > const&)int [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >, ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, unsigned long, seqan::AllocateStorage_>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, ReadSimulationInstruction<seqan::Tag<_LS454Reads> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, void, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void>, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void>, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >, unsigned long>(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> > >(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘buildReadSimulationInstruction<seqan::Tag<_LS454Reads>, seqan::Rng<seqan::MersenneTwister>, seqan::Alloc<void> >(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, seqan::Rng<seqan::MersenneTwister>&, unsigned int const&, seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::String<double, seqan::Alloc<void> > const&, unsigned long const&, bool, ModelParameters<seqan::Tag<_LS454Reads> > const&, Options<seqan::Tag<_LS454Reads> > const&)int [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551408’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘buildReadSimulationInstruction<seqan::Tag<_LS454Reads>, seqan::Rng<seqan::MersenneTwister>, seqan::Alloc<void> >(seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<void> >&, seqan::Rng<seqan::MersenneTwister>&, unsigned int const&, seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > const&, seqan::String<double, seqan::Alloc<void> > const&, unsigned long const&, bool, ModelParameters<seqan::Tag<_LS454Reads> > const&, Options<seqan::Tag<_LS454Reads> > const&)int [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  8%] Linking CXX executable ../../../bin/mason
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘buildReadSimulationInstruction.constprop.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551456’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘buildReadSimulationInstruction.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘buildReadSimulationInstruction.constprop.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551456’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘buildReadSimulationInstruction.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Built target mason
make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:25:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:662:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  662 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:691:49: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  691 |         struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:747:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  747 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:779:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  779 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1378:35: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1378 |                 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
      |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   initializing argument 2 of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, const RazerSOptions<TSpec>&, MicroRNA) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = RazerSSpec<>]’
 1276 |         Segment<TGenome, InfixSegment> inf,             // potential match genome region
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   570 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1490 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1491:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1491 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1474:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1474 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1492:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1492 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   612 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   562 |                 appendValue(reads, seq, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1497:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1497 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   562 |                 appendValue(reads, seq, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::_parse_readShape<std::basic_fstream<char, std::char_traits<char> >, char>(std::basic_fstream<char, std::char_traits<char> >&, char&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:861:15,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1068:25,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memmove’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[  9%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[  9%] Linking CXX executable ../../../bin/micro_razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  9%] Built target micro_razers
make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   262 |         _initAlignParams<Dna5>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   298 |         _initAlignParams<Rna5>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   316 |         _initAlignParams<AminoAcid>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<char, seqan::Alloc<void> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::String<char, seqan::Alloc<void> >, void, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::HtmlToolDocPrinter_::_toHtml<seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&) constseqan::String<char, seqan::Alloc<void> > [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::HtmlToolDocPrinter_::_toHtml<seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&) constseqan::String<char, seqan::Alloc<void> > [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 11%] Linking CXX executable ../../../bin/pair_align
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   120 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    80 |     Dna5String seqFirstRC = seqFirst;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 12%] Linking CXX executable ../../../bin/rabema_prepare_sam
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Built target rabema_prepare_sam
make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    88 | class ModifiedIterator
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   507 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   411 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   901 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     902 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   411 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   901 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     902 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   869 |             if (readSequence(contig, faiIndex, faiRefId) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 14%] Linking CXX executable ../../../bin/rabema_build_gold_standard
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_build_gold_standard
make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, String<TAlphabet>&) [with TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1886 |         findIntervals(it.g,it.pm,query,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:635:22:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   635 |         findIntervals(intervalTrees[seqId], lastPos, queryResult);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1311 |         reserve(refSeqs[i], sequenceLength(faiIndex, i), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   611 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   611 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX executable ../../../bin/rabema_evaluate
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_evaluate
make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:3:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:13:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    88 | class ModifiedIterator
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   507 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    23 |     Dna5String contig = argv[1];
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                               ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:2:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX executable ../../../bin/rabema_do_search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_do_search
make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:715:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  715 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:747:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  747 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:779:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  779 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:55:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:237:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  237 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function ‘seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  548 |     else if (endsWith(tmp, ".gff"))
      |          ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  551 |         if (isSet(parser, "shape"))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  585 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  587 |         if ((options.minClippedLen < 0) && (stop = true))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1490 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1491:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1491 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1474:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1474 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1492:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1492 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1128 |             arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1176 |     AssignString_<Tag<TExpand> >::assign_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1108 |     assign(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   173 |         assign(*this, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   918 |                                                         gInf = infix(genomes[(*it).gseqNo], (*it).gBegin, (*it).gEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   241 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   199 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1497:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1497 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   199 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::_parse_readShape<std::basic_fstream<char, std::char_traits<char> >, char>(std::basic_fstream<char, std::char_traits<char> >&, char&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:861:15,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1068:25,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memmove’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[ 19%] Linking CXX executable ../../../bin/razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o -MF CMakeFiles/razers2.dir/razers.cpp.o.d -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:488:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  488 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:535:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:583:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  583 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:630:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  630 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:127:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:169:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  169 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:228:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  228 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  492 |     if (!isSet(parser, "read-naming") && options.outputFormat == 4)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  495 |         if (isSet(parser, "shape"))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  529 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  532 |         options.errorRate = (100.0 - options.errorRate) / 100.0;
      |         ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_dequeue.h:344:8:   required from ‘void seqan::pushBack(Dequeue<TValue, TSpec>&, const TValue&) [with TValue = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   344 |         assign(*me.data_back, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   510 |                                         pushBack(fifo, fL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>& seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>::operator=(const seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; T3 = seqan::AlignQualityStoreElement<signed char, void>; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         reserve(store.readSeqStore.concat, length(store.readSeqStore.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1049:21:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1049 |                                 TReadPrefixRev          readRev(prefix(readSet[readId], ndlLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1068 |                                 TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = False]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1053:48:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1053 |                 convertMatchesToGlobalAlignment(store, scoreType, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1015:13:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1015 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1069:22:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1069 |                                 TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   481 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1073:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1073 |                                 while (find(myersFinderRev, myersPatternRev, /*score*/maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   194 |                 appendMatePair(store, seq[0], seq[1], id[0], id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |                 appendMatePair(store, seq[0], seq[1], id[0], id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23:   required from ‘void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TSource1 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TSource2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   605 |         valueConstruct(target_begin, getValue(source_begin));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValueTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1420 |     _arrayConstructCopyDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValueTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:1435:18:   required from ‘typename seqan::Size<seqan::StringSet<TString, TSpec> >::Type seqan::resize(StringSet<TString, TSpec>&, TSize, Tag<TUsage>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TSize = unsigned int; TExpand = TagExact_; typename Size<StringSet<TString, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1435 |     return resize(me.strings, new_size, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:731:8:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   731 |         resize(readSetL, pairCount, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource1 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource2 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource1 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource2 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   510 |                                         pushBack(fifo, fL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>& seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>::operator=(const seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; T3 = seqan::AlignQualityStoreElement<signed char, void>; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AssignString_<seqan::Tag<seqan::TagGenerous_> >::assign_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31,
    inlined from ‘seqan::assign<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42,
    inlined from ‘seqan::assign<char, seqan::Alloc<void>, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1099:11,
    inlined from ‘seqan::String<char, seqan::Alloc<void> >::String<char>(char&)’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:100:19,
    inlined from ‘seqan::_parseReadFilepath<std::basic_ifstream<char, std::char_traits<char> >, char>(std::basic_ifstream<char, std::char_traits<char> >&, char&)seqan::String<char, seqan::Alloc<void> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:330:15,
    inlined from ‘getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:90:50:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:73:14: note: ‘c’ declared here
   73 |         char c = _streamGet(file);
      |              ^
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::_parseReadFilepath<std::basic_ifstream<char, std::char_traits<char> >, char>(std::basic_ifstream<char, std::char_traits<char> >&, char&)seqan::String<char, seqan::Alloc<void> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:338:9,
    inlined from ‘getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:90:50:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:73:14: note: ‘c’ declared here
   73 |         char c = _streamGet(file);
      |              ^
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::_parse_readShape<std::basic_fstream<char, std::char_traits<char> >, char>(std::basic_fstream<char, std::char_traits<char> >&, char&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:861:15,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1068:25,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memmove’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o -MF CMakeFiles/razers2.dir/param_tabs.cpp.o.d -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp
[ 20%] Linking CXX executable ../../../bin/razers2
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 20%] Built target razers2
make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                                ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   361 |         typename Iterator<TSeqString const>::Type it_end = end(seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   361 |         typename Iterator<TSeqString const>::Type it_end = end(seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   492 |                 seqan::Dna5String seqCopy = seq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 22%] Linking CXX executable ../../../bin/sak
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Built target sak
make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   155 |         if (readRecord(id, seq, seqStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/s390x-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/bits/stl_tree.h:64:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:38:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 24%] Linking CXX executable ../../../bin/sam2matrix
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 25%] Linking CXX executable ../../../bin/samcat
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target samcat
make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = long unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TIterator>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TIterator>::Type>::Type = long unsigned int; typename Value<TIterator>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   576 |                                         findIntervalsExcludeTouching(gs[seq_i_pos],pms[seq_i_pos],node_i,relevant_segments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   700 |         matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:229:17:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, Graph<Alignment<TStringSet, TCargo, TSpec2> >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; FrequencyCounting = const Tag<FrequencyCounting_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   229 |         matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:115:21:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   115 |         buildAlignmentGraph(matches, g, FrequencyCounting() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   282 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2068 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2079 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2100 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   282 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Rna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   302 |         _initMsaParams<Rna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, AminoAcid_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   322 |         _initMsaParams<AminoAcid>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 25%] Linking CXX executable ../../../bin/seqan_tcoffee
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target seqan_tcoffee
make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o -MF CMakeFiles/seqcons.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function ‘seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   94 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   98 |         getOptionValue(consOpt.readsfile, parser, "reads");
      |         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  240 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  244 |         typedef FragmentStore<> TFragmentStore;
      |         ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = long unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TIterator>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TIterator>::Type>::Type = long unsigned int; typename Value<TIterator>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   576 |                                         findIntervalsExcludeTouching(gs[seq_i_pos],pms[seq_i_pos],node_i,relevant_segments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   700 |         matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:182:17:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TValue2, TSpec2>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; FractionalScore = const Tag<FractionalScore_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   182 |         matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:311:21:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TValue2, TSpec2>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TScore = Score<int, Tag<Simple_> >; ReScore = const Tag<ReScore_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   311 |         buildAlignmentGraph(matches, scores, outGraph, FractionalScore() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:564:21:   required from ‘void seqan::consensusAlignment(Graph<Alignment<TStringSet, TCargo, TSpec> >&, String<Pair<TSize, TSize> >&, const TConfigOptions&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TSize = long unsigned int; TConfigOptions = ConsensusOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   564 |         buildAlignmentGraph(matches, scores, g, consOpt.sc, ReScore() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:278:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   278 |                                 consensusAlignment(gOut, begEndPos, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2068 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2079 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2100 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2801 |                                                                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15:   required from ‘void seqan::reAlign(FragmentStore<TSpec, TConfig>&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TScore = Score<int, WeightedConsensusScore<Score<int, const Tag<FractionalScore_> >, Score<int, const Tag<ConsensusScore_> > > >; TId = long unsigned int; TMethod = int; TBandwidth = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   776 |                         appendValue(contigEl.seq, (TAlphabet)value(itConsensus), Generous() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:12:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   263 |                                 reAlign(fragStore, combinedScore, currentContig, consOpt.rmethod, consOpt.bandwidth, consOpt.include);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from ‘int seqan::_convertSimpleReadFile(TFile&, FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1545 |                         appendRead(fragStore, seq, fragId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   166 |                 if (_convertSimpleReadFile(strmReads, fragStore, consOpt.readsfile, moveToFront) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>*; TParam = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2738 |                 TContigGapsPW           contigGapsPW(/*contigInfix, */gaps[(*it).id]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2739 |                 TReadGaps                       readGaps(store.readSeqStore[(*it).readId], (*it).gaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from ‘int seqan::_convertSimpleReadFile(TFile&, FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1545 |                         appendRead(fragStore, seq, fragId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |                 if (_convertSimpleReadFile(strmReads, fragStore, consOpt.readsfile, moveToFront) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<double, seqan::Alloc<void> >, double, unsigned long, seqan::AllocateStorage_>(seqan::String<double, seqan::Alloc<void> >&, double*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<double, void, unsigned long>(seqan::String<double, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<double, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<double, seqan::Alloc<void>, unsigned long>(seqan::String<double, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<double, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<double, seqan::Alloc<void>, unsigned long>(seqan::String<double, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<double, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<double, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<double, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<double, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<double, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<double, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<double, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<double, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::reserve<seqan::String<double, seqan::Alloc<void> >, unsigned long>(seqan::String<double, seqan::Alloc<void> >&, unsigned long const&)seqan::Size<seqan::String<double, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19,
    inlined from ‘seqan::upgmaTree<double, seqan::Tag<seqan::Default_>, double, seqan::Tag<seqan::Default_>, seqan::Tag<seqan::UpgmaWeightAvg_> >(seqan::Graph<seqan::Undirected<double, seqan::Tag<seqan::Default_> > >&, seqan::Graph<seqan::Tree<double, seqan::Tag<seqan::Default_> > >&, seqan::Tag<seqan::UpgmaWeightAvg_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:854:9,
    inlined from ‘seqan::upgmaTree<seqan::Graph<seqan::Undirected<double, seqan::Tag<seqan::Default_> > >, double, seqan::Tag<seqan::Default_> >(seqan::Graph<seqan::Undirected<double, seqan::Tag<seqan::Default_> > >&, seqan::Graph<seqan::Tree<double, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:965:11,
    inlined from ‘seqan::consensusAlignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, seqan::Tag<seqan::WithoutEdgeId_> const, unsigned long, seqan::ConsensusOptions>(seqan::Graph<seqan::Alignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, seqan::Tag<seqan::WithoutEdgeId_> const> >&, seqan::String<seqan::Pair<unsigned long, unsigned long, void>, seqan::Alloc<void> >&, seqan::ConsensusOptions const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:570:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::consensusAlignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, seqan::Tag<seqan::WithoutEdgeId_> const, unsigned long, seqan::ConsensusOptions>(seqan::Graph<seqan::Alignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, seqan::Tag<seqan::WithoutEdgeId_> const> >&, seqan::String<seqan::Pair<unsigned long, unsigned long, void>, seqan::Alloc<void> >&, seqan::ConsensusOptions const&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 27%] Linking CXX executable ../../../bin/seqcons
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19,
    inlined from ‘upgmaTree’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:854:9,
    inlined from ‘upgmaTree’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:965:11,
    inlined from ‘consensusAlignment’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:570:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘consensusAlignment’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqcons
make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:356:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  356 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:405:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  405 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:420:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  420 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:468:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  468 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:481:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  481 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:504:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  504 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:523:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  523 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:545:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  545 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h: In instantiation of ‘seqan::Pair<T1, T2, TSpec>::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:5235:46:   required from ‘void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  5235 |                                              Pair<unsigned,TReadInf>(1,rInf)));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:997:74:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   997 |                     if(!options.realign) dumpShortIndelPolymorphismsBatch(fragmentStore, readCigars, fragmentStore.contigStore[0].seq, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, indelFileStream, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1442 |     int result = detectSNPs(options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h:143:53: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  143 |     Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {}
      |                                                     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4144:36:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4144 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2564 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2565 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2566 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2567 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1012 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1200:28:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TExpand> >::Type seqan::iter(const T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<const T, const Tag<TExpand> >::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1200 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1178:16:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1178 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:450:22:   required from ‘bool seqan::isGap(const Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   450 |     return isGap(iter(gaps, clippedViewPos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4505:72:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  4505 |                 ((indelConsens[candidateViewPos].i1 & 7) == 6  && isGap(referenceGaps, candidateViewPos-refStart)))  // position in consensus is the same as in reference
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2564 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2565 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2566 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2567 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1012 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12:   required from ‘int seqan::readNChars(TBuffer&, RecordReader<TStream, TPass>&, unsigned int) [with TBuffer = String<SimpleType<unsigned char, Dna5Q_> >; TStream = std::basic_fstream<char>; TPass = SinglePass<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   943 |     reserve(buffer, n, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39:   required from ‘int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String<Pair<int> >&, StringSet<TSequence>&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream<char>*; TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TCigarStr = String<Pair<char, int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeIdMap = std::map<String<char, Alloc<> >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1004 |                         if (readNChars(curr_read, reader, 1) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   903 |                     result = readMatchesFromGFF_Batch(readFileStreams[j], fragmentStore, readCounts, readClips,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     904 |                                               readCigars, genomes[i], gIdStringToIdNumMap,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     905 |                                               i, currentWindowBegin, currentWindowEnd, highestChrId[j], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28:   required from ‘void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4809 |                 Dna5String gInf = infix(genome, currentBegin, currentEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |                         dumpSNPsBatch(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11,
    inlined from ‘seqan::readMatchesFromGFF_Batch<std::basic_fstream<char, std::char_traits<char> >*, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, seqan::String<unsigned int, seqan::Alloc<void> >, seqan::String<seqan::Pair<char, int, void>, seqan::Alloc<void> >, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >, long, unsigned int, int, seqan::SNPCallingOptions<seqan::SNPCallingSpec<true> > >(std::basic_fstream<char, std::char_traits<char> >*&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<seqan::Pair<int, int, void>, seqan::Alloc<void> >&, seqan::StringSet<seqan::String<seqan::Pair<char, int, void>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, unsigned int, long, long, int&, seqan::SNPCallingOptions<seqan::SNPCallingSpec<true> >&, bool)int [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1082:39:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memmove’ forming offset 1 is out of the bounds [0, 1] of object ‘<anonymous>’ with type ‘const char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h: In function ‘seqan::readMatchesFromGFF_Batch<std::basic_fstream<char, std::char_traits<char> >*, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >, seqan::String<unsigned int, seqan::Alloc<void> >, seqan::String<seqan::Pair<char, int, void>, seqan::Alloc<void> >, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >, long, unsigned int, int, seqan::SNPCallingOptions<seqan::SNPCallingSpec<true> > >(std::basic_fstream<char, std::char_traits<char> >*&, seqan::FragmentStore<seqan::SnpStoreSpec_, seqan::FragmentStoreConfig<seqan::SnpStoreSpec_> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<seqan::Pair<int, int, void>, seqan::Alloc<void> >&, seqan::StringSet<seqan::String<seqan::Pair<char, int, void>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >&, std::map<seqan::String<char, seqan::Alloc<void> >, unsigned int, std::less<seqan::String<char, seqan::Alloc<void> > >, std::allocator<std::pair<seqan::String<char, seqan::Alloc<void> > const, unsigned int> > >&, unsigned int, long, long, int&, seqan::SNPCallingOptions<seqan::SNPCallingSpec<true> >&, bool)int [clone .isra.0]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1082:39: note: ‘<anonymous>’ declared here
 1082 |                                 append(temp_read,'A');  // will be replaced with correct base in "mutations" loop
      |                                 ~~~~~~^~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/snp_store
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target snp_store
make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:59:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:525:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  564 |     for (unsigned i = 0; i < length(readFileNames); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  567 |         if(length(readFileNames) == 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  615 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  617 |         if ((options.minClippedLen < 0) && (stop = true))
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   584 |         return TRevComp(host);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  684 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  692 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2618:20:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2618 |                                 if (matchVerify( (*it).i2,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                     ~~~~~~~~~~~^~~~~~~~~~~
    2619 |                                                 infix(genome, (*it).i2.gBegin, maxEndPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2620 |                                                 rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~
    2621 |                                                 readSet, //readSetL
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~
    2622 |                                                 forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~
    2623 |                                                 options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~
    2624 |                                                 TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~
    2625 |                                                 LongestPrefix()) &&
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  684 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  692 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2036:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2036 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2183:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2183 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   584 |         return TRevComp(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2446 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   516 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2446 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   692 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<const seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(const Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<const Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:537:26:   required from ‘void seqan::setHost(ModifiedString<THost, TSpec>&, const THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     me._host = _toPointer(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:696:10:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   696 |                 setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[rseqNo])));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:477:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  477 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3101:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3101 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3103:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3103 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1466 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2256:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2256 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2259:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2259 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1171 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1628 |     __int64 textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1639 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2516 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  801 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1171 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1628 |     __int64 textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1639 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2516 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  801 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2410:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2410 |         TReadSetL &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2411 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2411 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:670:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   670 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:693:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   693 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:1735:14:   required from ‘bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions<TSpec>&, char, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TRead = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1735 |                 appendValue(strL,genomeInfL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1450:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1450 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1468:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1468 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1128 |             arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1176 |     AssignString_<Tag<TExpand> >::assign_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1108 |     assign(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   173 |         assign(*this, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1102 |                                                         gInf = infix(genomes[(*it).gseqNo], (*it).gBegin, (*it).gEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   508 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:704:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   704 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1473:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1473 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:185:61:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   185 |         typename Iterator<TSource const, Standard>::Type it = begin(source, Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:626:22:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::begin(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   626 |     TResult tmp(begin(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:497:103:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   497 |     typename Iterator<ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                                  ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:186:63:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   186 |         typename Iterator<TSource const, Standard>::Type it_end = end(source, Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   508 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/splazers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target splazers
make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:154:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:206:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:125:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  125 |     public::std::unary_function<AminoAcid, AminoAcid>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   718 |         mainWithOptions(options, String<Dna>());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna_>; TValueTarget = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna_>; TValueTarget = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, AminoAcid_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, AminoAcid_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<char, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<char, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<char, Alloc<> >, InfixSegment>*; TParam = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, long unsigned int, int, void>& seqan::Triple<long unsigned int, long unsigned int, int, void>::operator=(const seqan::Triple<long unsigned int, long unsigned int, int, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long unsigned int, long unsigned int, int, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, seqan::ScoreAndID<int, unsigned long>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, seqan::ScoreAndID<int, unsigned long>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::ScoreAndID<int, unsigned long>, void, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> > >(seqan::PriorityType<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::pop<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> > >(seqan::PriorityType<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> >, seqan::PriorityHeap>&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 30%] Linking CXX executable ../../../bin/stellar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target stellar
make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  139 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |         typedef double TDistanceValue;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  165 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  169 |         String<TName> names;
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/tree_recon
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target tree_recon
make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target seqan_extras
make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from ‘seqan::String<TValue, TSpec>& seqan::operator+=(String<TValue, TSpec>&, const TRight&) [with TLeftValue = SimpleType<unsigned char, Dna5_>; TLeftSpec = Alloc<>; TRight = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1980 |     append(left, right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1292 |                 sequenceCut += infix(sequence, position(itSeq), i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                  ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9:   required from ‘void seqan::unhash(TString&, THash, unsigned int) [with TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; THash = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1051 |                 resize(result, q);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    60 |         unhash(w, i, k);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   181 |             appendValue(mySequenceSet, sequenceTmp, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexQGram<UngappedShape<0> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15:   required from ‘void seqan::MarkovModel<TAlphabet, TFloat, TSpec>::build(const seqan::StringSet<seqan::String<TString> >&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TFloat = double; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   303 |                 indexRequire(ind, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10:   required from ‘void seqan::buildMarkovModel(MarkovModel<TAlphabet, TFloat, TSpec>&, StringSet<String<TString> >&) [with TAlphabet = SimpleType<unsigned char, Dna_>; TFloat = double; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   866 |         mm.build(stringSet);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21:   required from ‘void seqan::countKmers(String<unsigned int, Alloc<> >&, MarkovModel<TAlphabetBG, TValue>&, const TString&, unsigned int) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TAlphabetBG = SimpleType<unsigned char, Dna_>; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   395 |     buildMarkovModel(backgroundModel, seqSetMM);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const AFScore<const Tag<D2z_> >&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   135 |             countKmers(*itKmerCounts, *itMM, *itSeqSet, score.kmerSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<D2z_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   195 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreD2z);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexQGram<UngappedShape<0> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15:   required from ‘void seqan::MarkovModel<TAlphabet, TFloat, TSpec>::build(const seqan::StringSet<seqan::String<TString> >&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TFloat = double; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   303 |                 indexRequire(ind, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10:   required from ‘void seqan::buildMarkovModel(MarkovModel<TAlphabet, TFloat, TSpec>&, StringSet<String<TString> >&) [with TAlphabet = SimpleType<unsigned char, Dna_>; TFloat = double; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   866 |         mm.build(stringSet);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21:   required from ‘void seqan::countKmers(String<unsigned int, Alloc<> >&, MarkovModel<TAlphabetBG, TValue>&, const TString&, unsigned int) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TAlphabetBG = SimpleType<unsigned char, Dna_>; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   395 |     buildMarkovModel(backgroundModel, seqSetMM);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const AFScore<const Tag<D2z_> >&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   135 |             countKmers(*itKmerCounts, *itMM, *itSeqSet, score.kmerSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<D2z_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   195 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreD2z);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from ‘seqan::String<TValue, TSpec>& seqan::operator+=(String<TValue, TSpec>&, const TRight&) [with TLeftValue = SimpleType<unsigned char, Dna5_>; TLeftSpec = Alloc<>; TRight = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1980 |     append(left, right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1292 |                 sequenceCut += infix(sequence, position(itSeq), i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                  ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from ‘void seqan::calculateCovariance(TValue&, const String<TAlphabet, TSpec>&, const String<TAlphabet, TSpec>&, MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   850 |         append(clump, word2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from ‘void seqan::_standardiseCounts(TString&, const String<unsigned int, Alloc<> >&, const StringSet<String<unsigned int, Alloc<> > >&, const TSequence&, const AFScore<const Tag<N2_> >&) [with TString = String<double>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   549 |                             calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundModel, (len1 + score.kmerSize - 1));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   179 |         _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   205 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna_>*; TSource1 = SimpleType<unsigned char, Dna_>*; TSource2 = SimpleType<unsigned char, Dna_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from ‘void seqan::calculateCovariance(TValue&, const String<TAlphabet, TSpec>&, const String<TAlphabet, TSpec>&, MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   850 |         append(clump, word2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from ‘void seqan::_standardiseCounts(TString&, const String<unsigned int, Alloc<> >&, const StringSet<String<unsigned int, Alloc<> > >&, const TSequence&, const AFScore<const Tag<N2_> >&) [with TString = String<double>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   549 |                             calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundModel, (len1 + score.kmerSize - 1));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   179 |         _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   205 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/alf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target alf
make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -MF CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o.d -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/breakpoint_calculator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target breakpoint_calculator
make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h:28:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   28 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   297 |     return value(me);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   294 |         postProcessMain(options, BsNonSimple());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1256 |         TReadSeq readSeq =  store.readSeqStore[readId];
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20:   required from ‘int writeBsAlignment(TStream&, const seqan::BamIOContext<TNameStore, TNameStoreCache>&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream<char>; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TNameStoreCache = seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   242 |         Dna5String tmpReadSeq = readSeq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1194 |                         writeBsAlignment(outStream, bamIOContext, store, setContigGaps[verifiedMates.alignedReadIdL], verifiedMates.alignedReadIdL, verifiedMates.mapqL, verifiedMates.recordL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   102 |                 appendMatePair(store, seq[0], seq[1], _id[0], _id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1117 |         loadReadsCroppedId(store, options.readFileName, options.readFileName2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   102 |                 appendMatePair(store, seq[0], seq[1], _id[0], _id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1117 |         loadReadsCroppedId(store, options.readFileName, options.readFileName2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 33%] Linking CXX executable ../../../bin/bisar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target bisar
make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:42:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   42 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:17:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   17 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:66:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   66 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:81:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   81 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:129:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  129 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:142:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  142 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:165:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:184:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  184 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:206:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1189 |     return begin(me, tag_) + pos;
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1387:36:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1387 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1286 |     int result = detectSNPs(options, methOptions);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:343:54:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   343 |         TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15:   required from ‘int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext<TNameStore>&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigId = int; TContigPos = long int; TOptions = SNPCallingOptions; typename seqan::Value<TMatrix>::Type = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   680 |         TRead curr_read = record.seq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   697 |             int result = readMatchesFromSamBam(setContigAnchorGaps, *recordReaders[j], contexts[j], records[j], fragmentStoreTmp, fragmentStore1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     698 |                                                currContigId, currentWindowBegin, currentWindowEnd, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreCT_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  190 |                 me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
  191 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreCTRight_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  190 |                 me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
  191 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreGA_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  265 |                 me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
  266 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreGARight_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  265 |                 me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
  266 |             case -1: // Ref gap
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<Naive_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<__float128, seqan::Alloc<void> >, __float128, unsigned long, seqan::AllocateStorage_>(seqan::String<__float128, seqan::Alloc<void> >&, __float128*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<__float128, void, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<__float128, seqan::Alloc<void>, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<__float128, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&, seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<__float128, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<__float128, seqan::Alloc<void> >, unsigned long>(seqan::String<__float128, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<__float128, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<__float128, seqan::Alloc<void> > >(seqan::String<__float128, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<Naive_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22,
    inlined from ‘adjustConstantsSize<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, char>(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, char, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods<seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, MethCallingOptions, RefContext, seqan::Tag<LogFunction_> >(seqan::String<seqan::String<seqan::String<__float128, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, MethCallingOptions&, RefContext&, seqan::Tag<LogFunction_> const&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘getCandidateProbs<seqan::String<__float128, seqan::Alloc<void> >, seqan::String<__float128, seqan::Alloc<void> >, MethCallingOptions, SNPCallingOptions, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<unsigned int, seqan::Alloc<void> >, RefContext>(seqan::String<__float128, seqan::Alloc<void> >&, seqan::String<__float128, seqan::Alloc<void> >&, MethCallingOptions&, SNPCallingOptions&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<int, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<seqan::String<bool, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::String<unsigned int, seqan::Alloc<void> >&, RefContext&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 35%] Linking CXX executable ../../../bin/casbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22,
    inlined from ‘adjustConstantsSize’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24,
    inlined from ‘constructConstantsAndLHoods’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36,
    inlined from ‘getCandidateProbs’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘getCandidateProbs’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target casbar
make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:14:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   14 | struct ConvertCT : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:23:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   23 | struct ConvertGA : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:36:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 37%] Linking CXX executable ../../../bin/four2three
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target four2three
make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   219 |         if (readSequence(contigSeq, faiIndex, i) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX executable ../../../bin/fx_bam_coverage
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_bam_coverage
make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, TQualString&, RecordReader<TFile, TSpec>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TQualString = String<char, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   580 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TQualities = seqan::String<char, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   458 |                 res = seqan::readRecord(id, seq, qual, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:38:   required from ‘int seqan::readRecord(TId&, TSequence&, TQualities&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TQualities = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   680 |         res = seqIO._impl->readRecord(id, seq, qual, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   303 |         if (readRecord(id, seq, quals, inStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/s390x-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/bits/stl_tree.h:64:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX executable ../../../bin/fx_fastq_stats
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_fastq_stats
make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:30:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:154:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:206:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   185 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   185 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   809 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   809 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String<TCargo>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15:   required from ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1917 |         findIntervals(g, pm, act_knot, query_begin, query_end, result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, TValue, String<TAlphabet>&) [with TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1898 |         findIntervals(tree.g,tree.pm,query_begin,query_end,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:240:18:   required from ‘bool _checkRightMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   240 |     findIntervals(gustafChain.rightMateTree, mateIntervalBegin, mateIntervalEnd, confMateMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:278:42:   required from ‘bool _checkMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   278 |             return _checkRightMateMatches(sMatch, queryMatches, gustafChain, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:345:35:   required from ‘void _initialiseGraphMatePairs(QueryMatches<StellarMatch<TSequence, TId> >&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   345 |             if (!_checkMateMatches(queryMatches.matches[i], queryMatches.matches, chain, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_algorithms.h:644:42:   required from ‘void _chainQueryMatches(seqan::StringSet<QueryMatches<StellarMatch<TSequence, TId> > >&, seqan::String<TSequenceValue>&, seqan::String<TEmission>&, const seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TScoreAlloc = seqan::String<int>; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   644 |                 _initialiseGraphMatePairs(stellarMatches[i], chain, msplazerOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:224:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   224 |     _chainQueryMatches(stellarMatches, distanceScores, queryChains, queryIDs, queries, readJoinPositions, msplazerOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1949 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1961 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1982 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8:   required from ‘bool _writeGlobalBreakpoints(const seqan::String<TString>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TId>&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::Vcf = seqan::Tag<seqan::Vcf_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   121 | struct Breakpoint
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |        ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   271 |     _writeGlobalBreakpoints(globalBreakpoints, databases, databaseIDs, msplazerOptions, Vcf());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   177 |         append(seq, seqL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    72 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, shortQueryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:401:10:   required from ‘void seqan::assignSource(Gaps<TSequence, Tag<ArrayGaps_> >&, const TSequence2&) [with TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   401 |     value(gaps._source) = source;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |         append(seq, seqL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    72 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, shortQueryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1929:12:   required from ‘void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, const TSource&) [with TTarget = String<Triple<long unsigned int, long unsigned int, int, void>, Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = String<Triple<long unsigned int, long unsigned int, int, void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1929 |     replace(target, pos_begin, pos_end, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:224:20:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   224 |             replace(queue, 0, 2, String<TMerger>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, long unsigned int, int, void>& seqan::Triple<long unsigned int, long unsigned int, int, void>::operator=(const seqan::Triple<long unsigned int, long unsigned int, int, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long unsigned int, long unsigned int, int, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, seqan::ScoreAndID<int, unsigned long>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, seqan::ScoreAndID<int, unsigned long>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::ScoreAndID<int, unsigned long>, void, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> > >(seqan::PriorityType<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::pop<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> > >(seqan::PriorityType<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> >, seqan::PriorityHeap>&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, seqan::ScoreAndID<int, unsigned long>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, seqan::ScoreAndID<int, unsigned long>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::ScoreAndID<int, unsigned long>, void, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::ScoreAndID<int, unsigned long>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> > >(seqan::PriorityType<seqan::ScoreAndID<int, unsigned long>, std::less<seqan::ScoreAndID<int, unsigned long> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::_getNextBestEndPosition<int>(seqan::LocalAlignmentFinder<int>&, int)seqan::LocalAlignmentFinder<int>::TMatrixPosition’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8,
    inlined from ‘seqan::_localAlignmentNext<int, seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_>, seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_>, seqan::Score<int, seqan::Tag<seqan::Simple_> >, int>(seqan::LocalAlignmentFinder<int>&, seqan::Gaps<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&, seqan::Gaps<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&, seqan::Score<int, seqan::Tag<seqan::Simple_> > const&, int, int, int, seqan::Tag<seqan::BandedWatermanEggert_> const&)int’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:39,
    inlined from ‘seqan::nextLocalAlignment<int, seqan::Tag<seqan::Simple_>, seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_>, seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >(seqan::Gaps<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&, seqan::Gaps<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&, seqan::LocalAlignmentEnumerator<seqan::Score<int, seqan::Tag<seqan::Simple_> >, seqan::Tag<seqan::Banded_> >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:109:35,
    inlined from ‘seqan::nextLocalAlignment<int, seqan::Tag<seqan::Simple_>, seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >(seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&, seqan::LocalAlignmentEnumerator<seqan::Score<int, seqan::Tag<seqan::Simple_> >, seqan::Tag<seqan::Banded_> >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:121:30,
    inlined from ‘verifySwiftHit<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String<char, seqan::Alloc<void> >, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Tag<VerifyAllLocal_> >(seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment> const&, seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::InfixSegment>, seqan::InfixSegment> const&, double, int, double, unsigned int, unsigned int, unsigned int&, unsigned int, seqan::String<char, seqan::Alloc<void> >&, bool, QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> > > >&, seqan::Tag<VerifyAllLocal_>)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:617:30,
    inlined from ‘stellar<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::IndexQGram<seqan::UngappedShape<0u>, seqan::Tag<seqan::OpenAddressing_> >, int, double, unsigned int, bool, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >, seqan::Tag<VerifyAllLocal_> >(seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0u>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, int, double, unsigned int, unsigned int&, unsigned int, bool, seqan::String<char, seqan::Alloc<void> >&, bool, seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> > > >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::Tag<VerifyAllLocal_>)void [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘stellar<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> >, seqan::IndexQGram<seqan::UngappedShape<0u>, seqan::Tag<seqan::OpenAddressing_> >, int, double, unsigned int, bool, seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >, seqan::Tag<VerifyAllLocal_> >(seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0u>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, int, double, unsigned int, unsigned int&, unsigned int, bool, seqan::String<char, seqan::Alloc<void> >&, bool, seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> > > >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::Tag<VerifyAllLocal_>)void [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 40%] Linking CXX executable ../../../bin/gustaf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:362:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘__ct ’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:362:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘_getNextBestEndPosition’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8,
    inlined from ‘_localAlignmentNext’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:39,
    inlined from ‘nextLocalAlignment’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:109:35,
    inlined from ‘nextLocalAlignment’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:121:30,
    inlined from ‘verifySwiftHit’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:617:30,
    inlined from ‘stellar.isra’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘stellar.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target gustaf
make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:16:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function ‘void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, FragmentStore<TSpec, TConfig>&, TMap&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  225 |         if (getValue(itAnno).typeId != INVALID_ID)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |                 if (getValue(itAnno).contigId == INVALID_ID )
      |                 ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function ‘bool seqan::ngsOverlapper(TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (!readOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |         createReadCountGFF(readOutput, readAnnoStore, fragStore);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  908 |     if (!annoOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  910 |         createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  915 |     if (!tupleOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  917 |         createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM);
      |         ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  188 |     if (res != ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  191 |         if (options.maxTuple)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h: In instantiation of ‘seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> > seqan::nodeDown(const Iter<TFragmentStore, AnnotationTree<TSpec> >&) [with TFragmentStore = FragmentStore<>; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:45:64:   required from ‘void seqan::adjustParentEntries(FragmentStore<TSpec, TConfig>&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:    45 |             getAnnotation(it).contigId = getAnnotation(nodeDown(it)).contigId;  // If no child exists: nothing happens
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |                                                        ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:865:21:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:   865 |         adjustParentEntries(fragStore);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1281:54: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
 1281 |         Iter<TFragmentStore, AnnotationTree<TSpec> > tmp(it);
      |                                                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  415 |         operator = (Iter const &_origin)
      |         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1283:16: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
 1283 |         return tmp;
      |                ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  415 |         operator = (Iter const &_origin)
      |         ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<long int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_intervaltree.h:182:15:   required from ‘void seqan::findIntervalsForInterval(String<TSequenceValue>&, TIntervalTree&, TInterval&, const unsigned int&) [with TIntervalTree = IntervalTree<long int, unsigned int>; TInterval = Interval<unsigned int>; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   182 |         findIntervals(intervalTree.g, intervalTree.pm, interval.i1 + offsetInterval, result1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:82:27:   required from ‘void seqan::getIdsForRead(TAnnoIds&, FragmentStore<TSpec, TConfig>&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TIntervalTree = IntervalTree<long int, unsigned int>; TIntervals = String<Interval<unsigned int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:    82 |                 findIntervalsForInterval(value(itR), intervalTree, getValue(itI), offsetInterval);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/fusion.h:775:18:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   775 |                                 getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:884:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   884 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  2801 |                                                                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>*; TParam = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2738 |                 TContigGapsPW           contigGapsPW(/*contigInfix, */gaps[(*it).id]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2739 |                 TReadGaps                       readGaps(store.readSeqStore[(*it).readId], (*it).gaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>, Alloc<> >; TValue = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14:   required from ‘void seqan::_storeAppendContig(FragmentStore<TSpec, TConfig>&, TId&, TName&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TId = unsigned int; TName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1117 |                 appendValue(fragStore.contigStore, TContigElement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23:   required from ‘void seqan::_storeOneAnnotation(TFragmentStore&, IOContextGff_<TFragmentStore, TSpec>&) [with TFragmentStore = FragmentStore<>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   256 |     _storeAppendContig(fragStore, ctx.annotation.contigId, ctx.contigName);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Gff) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Gff = Tag<TagGff_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   331 |             _storeOneAnnotation(fragStore, ctx);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   861 |             read(fileGFF, fragStore, Gff());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from ‘void seqan::_readAlignments(TStreamOrReader&, BamIOContext<TNameStore, TNameStoreCache>&, FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > >, String<char, Alloc<> > >; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigAnchorGaps = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >; TMatchMateInfos = String<MatchMateInfo_<long int, unsigned int>, Alloc<> >; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   577 |             _readOneAlignment(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, contextSAM,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     578 |                               importFlags, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |         _readAlignments(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, tag, importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from ‘void seqan::_readAlignments(TStreamOrReader&, BamIOContext<TNameStore, TNameStoreCache>&, FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > >, String<char, Alloc<> > >; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigAnchorGaps = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >; TMatchMateInfos = String<MatchMateInfo_<long int, unsigned int>, Alloc<> >; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   577 |             _readOneAlignment(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, contextSAM,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     578 |                               importFlags, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |         _readAlignments(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, tag, importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 41%] Linking CXX executable ../../../bin/insegt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph.constprop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_copyGraph.constprop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target insegt
make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:49:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:50:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, GenomicInterval>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, String<TAlphabet>&) [with TValue = int; TCargo = GenomicInterval]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1886 |         findIntervals(it.g,it.pm,query,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:644:18:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   644 |     findIntervals(svIntervalTree, svPos, intervals);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   234 |                 append(seq, infix(contig, lastPos, snpRecord.pos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   246 |                 appendValue(seq, snpRecord.to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   234 |                 append(seq, infix(contig, lastPos, snpRecord.pos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::String<char, seqan::Alloc<void> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::String<char, seqan::Alloc<void> >, void, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> > >(seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::HtmlToolDocPrinter_::_toHtml<seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&) constseqan::String<char, seqan::Alloc<void> > [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::HtmlToolDocPrinter_::_toHtml<seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> > const&) constseqan::String<char, seqan::Alloc<void> > [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   372 |             appendValue(seq, seqan::Dna(i % 4));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, seqan::CigarElement<char, unsigned int>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::CigarElement<char, unsigned int>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::CigarElement<char, unsigned int>, void, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char) [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/stdexcept:38:
/usr/include/c++/14/new: In function ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char) [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = char; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    69 |                 appendValue(contig, 'A');
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                        ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                        ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:193:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   193 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |                 appendValue(read, *it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |         _simulateSequence(seq, rng, prefix(frag, lenInRef), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, seqan::CigarElement<char, unsigned int>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::CigarElement<char, unsigned int>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::CigarElement<char, unsigned int>, void, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/stdexcept:38:
/usr/include/c++/14/new: In function ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                            ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                            ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:59:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    59 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    67 |                 appendValue(read, *it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   144 |         _simulateSequence(seq, rng, prefix(frag, sampleLength), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, seqan::CigarElement<char, unsigned int>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::CigarElement<char, unsigned int>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::CigarElement<char, unsigned int>, void, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/stdexcept:38:
/usr/include/c++/14/new: In function ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   268 |         if (readSequence(seq, faiIndex, currRID) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX static library libmason_sim.a
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1
/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
/usr/bin/ranlib libmason_sim.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target mason_sim
make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable ../../../bin/mason_genome
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_genome
make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   166 |         if (readSequence(contig, faiIndex, i) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable ../../../bin/mason_methylation
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_methylation
make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   202 |         if (readRecord(fragId, fragSeq, inFragments) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX executable ../../../bin/mason_frag_sequencing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘appendOperation’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Built target mason_frag_sequencing
make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1085 |         resize(tos, options.numHaplotypes, from);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<StructuralVariantRecord, seqan::Alloc<void> >, StructuralVariantRecord, unsigned long, seqan::AllocateStorage_>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, StructuralVariantRecord*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<StructuralVariantRecord, void, unsigned long>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<StructuralVariantRecord, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<StructuralVariantRecord, seqan::Alloc<void>, unsigned long>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<StructuralVariantRecord, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<StructuralVariantRecord, seqan::Alloc<void>, unsigned long>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<StructuralVariantRecord, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<StructuralVariantRecord, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<StructuralVariantRecord, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, seqan::Size<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<StructuralVariantRecord, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<StructuralVariantRecord, seqan::Alloc<void> >, unsigned long>(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<StructuralVariantRecord, seqan::Alloc<void> > >(seqan::String<StructuralVariantRecord, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, seqan::String<char, seqan::Alloc<void> > const&)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:317:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551504’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, seqan::String<char, seqan::Alloc<void> > const&)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 54%] Linking CXX executable ../../../bin/mason_variator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:118:14,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:113:16,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7,
    inlined from ‘reinit’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:765:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘reinit’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:118:14,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:113:16,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7,
    inlined from ‘reinit’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:765:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘reinit’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:118:14,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:113:16,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7,
    inlined from ‘reinit’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:766:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘reinit’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24,
    inlined from ‘_copyGraph’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:118:14,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:113:16,
    inlined from ‘operator=’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7,
    inlined from ‘reinit’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:766:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘reinit’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_variator
make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function ‘int MasonMaterializerApp::run()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type ‘class MasonIOException’ by value [-Wcatch-value=]
  110 |         catch (MasonIOException e)
      |                                 ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 56%] Linking CXX executable ../../../bin/mason_materializer
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_materializer
make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:243:34:   required from ‘void seqan::_reinitArrayGaps(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   243 |     _setLength(gaps, length(value(gaps._source)));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                             ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:153:25:   required from ‘seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> >::Gaps(TSequence&) [with TSequence = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   153 |         _reinitArrayGaps(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:221:57:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   221 |         seqan::Gaps<TContigInfix> gapsContig(contigInfix);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   476 |     TConstSeqHIterator seqHIter = begin(seqH, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:40:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   476 |     TConstSeqHIterator seqHIter = begin(seqH, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                   ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   817 |             if (readSequence(refSeq, vcfMat.faiIndex, rID) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/s390x-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/vector:63:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:45:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 58%] Linking CXX executable ../../../bin/mason_simulator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22,
    inlined from ‘simulateRead’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:377:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘simulateRead’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22,
    inlined from ‘simulateRead’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:382:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘simulateRead’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘appendOperation’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_simulator
make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function ‘int MasonSplicingApp::run()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type ‘class MasonIOException’ by value [-Wcatch-value=]
  138 |         catch (MasonIOException e)
      |                                 ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:   292 |                 append(transcript, buffer);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                 append(transcript, buffer);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 59%] Linking CXX executable ../../../bin/mason_splicing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_splicing
make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, seqan::CigarElement<char, unsigned int>, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::CigarElement<char, unsigned int>*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::CigarElement<char, unsigned int>, void, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> > >(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22,
    inlined from ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘appendOperation(seqan::String<seqan::CigarElement<char, unsigned int>, seqan::Alloc<void> >&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, unsigned long, seqan::AllocateStorage_>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned int*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<unsigned int, void, unsigned long>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<unsigned int, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<unsigned int, seqan::Alloc<void>, unsigned long>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<unsigned int, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<unsigned int, seqan::Alloc<void>, unsigned long>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<unsigned int, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<unsigned int, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<unsigned int, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<unsigned int, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<unsigned int, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<unsigned int, seqan::Alloc<void> > >(seqan::String<unsigned int, seqan::Alloc<void> >&, seqan::Size<seqan::String<unsigned int, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<unsigned int, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<unsigned int, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned int, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<unsigned int, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::obtainId<unsigned int, seqan::Tag<seqan::Default_> >(seqan::IdManager<unsigned int, seqan::Tag<seqan::Default_> >&)seqan::Value<seqan::IdManager<unsigned int, seqan::Tag<seqan::Default_> >, 0>::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘seqan::addVertex<void, seqan::Tag<seqan::WithoutEdgeId_> const>(seqan::Graph<seqan::Directed<void, seqan::Tag<seqan::WithoutEdgeId_> const> >&)seqan::VertexDescriptor<seqan::Graph<seqan::Directed<void, seqan::Tag<seqan::WithoutEdgeId_> const> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::addVertex<void, seqan::Tag<seqan::WithoutEdgeId_> const>(seqan::Graph<seqan::Directed<void, seqan::Tag<seqan::WithoutEdgeId_> const> >&)seqan::VertexDescriptor<seqan::Graph<seqan::Directed<void, seqan::Tag<seqan::WithoutEdgeId_> const> > >::Type’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable ../../../bin/mason_tests
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘addVertex’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘appendOperation’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22,
    inlined from ‘appendOperation’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘appendOperation’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_tests
make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable ../../../bin/roi_plot_thumbnails
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target roi_plot_thumbnails
make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX executable ../../../bin/bam2roi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target bam2roi
make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:43:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 67%] Linking CXX executable ../../../bin/roi_feature_projection
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection  -lrt -L/usr/lib64 -lz 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Built target roi_feature_projection
make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h: In function ‘void seqan::pms1(TStrings&, TStrings&, const TType&, const TType&, const bool&, const Oops&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h:264:82: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<int>; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  264 |                                 std::count_if(vect_iter, upper_iter, std::bind2nd(std::equal_to<int>(), *vect_iter));
      |                                                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_function.h:1435:
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:66:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h: In function ‘void seqan::_filteringStep(TBucketAr&, TArray&, TType&, TStrings&, TPositions&, const TType&, const TType&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h:627:50: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater_equal<int>; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  627 |                                           bind2nd(std::greater_equal<int>(),static_cast<int>(s)));
      |                                           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1435 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1466 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1467:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1467 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2311:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2311 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2314:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2314 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1435 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   620 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1450:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1450 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1468:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1468 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from ‘void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIDs = StringSet<String<char, Alloc<> > >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TDistr = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   433 |                                 appendValue(readSet, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   755 |         simulateReads(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~^
     756 |                 testReads, dummyIDs, testGenome,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     757 |                 50000, maxErrors+1, logErrorDistribution, 0, 0, 0.5, true);     // generate 50K reads
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1473:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from ‘void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIDs = StringSet<String<char, Alloc<> > >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TDistr = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   433 |                                 appendValue(readSet, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   755 |         simulateReads(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~^
     756 |                 testReads, dummyIDs, testGenome,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     757 |                 50000, maxErrors+1, logErrorDistribution, 0, 0, 0.5, true);     // generate 50K reads
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2087 |         TIndex swiftIndex(readSet, shape);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  636 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here
  638 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  656 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here
  658 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<LevenshteinDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<LevenshteinDistance_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  636 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here
  638 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  656 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here
  658 |                                 case SEQAN_INSERT:
      |                                 ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX executable ../../../bin/param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Built target param_chooser
make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   620 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX executable ../../../bin/test_funcs_param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Built target test_funcs_param_chooser
make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:127:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:83:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:264:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:320:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  320 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:365:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  365 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:48:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   924 |                 pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                               ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2047 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   924 |                 pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                               ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2047 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1231:40:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1231 |         convertMatchesToGlobalAlignment(store, scoreType, True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |     assignSeq(firstRead, multiFasta[0], format);            // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   193 |                 resize(seq[j], options.trimLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:679:20:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   679 |     TFilterFinderR filterFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   887 |                 finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:896:43:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   896 |         finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2054 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   887 |                 finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2054 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   206 |         appendMatePair(store, seq[0], seq[1], seqId[0], seqId[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24:   required from ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   398 |             appendValue(indexText(indexL), readSetL[j]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |             appendValue(indexText(index), store.readSeqStore[j]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   206 |         appendMatePair(store, seq[0], seq[1], seqId[0], seqId[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   653 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2241:41:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2241 |                     TMyersFinderRev     myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   653 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1105:63:   required from ‘bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_<TNeedle, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1105 |         typename Size<TFinder>::Type const columns = length(container(finder)) + state.leftClip;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                             ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1297:44:   required from ‘bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1297 |         return _patternInitSmallStateBanded(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1654:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1654 |                 if (!_stateInit(finder, needle, state))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = AlignTextBanded<FindInfix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1766 |         return find(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2177:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2177 |     while (find(myersFinder, readPrefix, state, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_interface.h:752:24:   required from ‘void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   752 |     goEnd(it, container(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:948:7:   required from ‘void seqan::goEnd(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   948 |         goEnd(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1656:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1656 |             goEnd(finder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = AlignTextBanded<FindPrefix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1766 |         return find(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2245:32:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2245 |                     while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AssignString_<seqan::Tag<seqan::TagGenerous_> >::assign_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31,
    inlined from ‘seqan::assign<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42,
    inlined from ‘seqan::assign<char, seqan::Alloc<void>, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1099:11,
    inlined from ‘seqan::String<char, seqan::Alloc<void> >::String<char>(char&)’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:100:19,
    inlined from ‘seqan::_parseReadFilepath<std::basic_fstream<char, std::char_traits<char> >, char>(std::basic_fstream<char, std::char_traits<char> >&, char&)seqan::String<char, seqan::Alloc<void> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:330:15,
    inlined from ‘seqan::getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:630:60:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In function ‘seqan::getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:613:10: note: ‘c’ declared here
  613 |     char c = _streamGet(file);
      |          ^
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::_parseReadFilepath<std::basic_fstream<char, std::char_traits<char> >, char>(std::basic_fstream<char, std::char_traits<char> >&, char&)seqan::String<char, seqan::Alloc<void> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:338:9,
    inlined from ‘seqan::getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:630:60:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memcpy’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In function ‘seqan::getGenomeFileNameList<seqan::RazerSSpec<false, false> >(seqan::String<char, seqan::Alloc<void> >, seqan::StringSet<seqan::String<char, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > >&, seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&)int’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:613:10: note: ‘c’ declared here
  613 |     char c = _streamGet(file);
      |          ^
In function ‘std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<char const, char>(char const*, char const*, char*)char*’,
    inlined from ‘std::__copy_move_a2<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘std::__copy_move_a1<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘std::__copy_move_a<false, char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘std::copy<char const*, char*>(char const*, char const*, char*)char*’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘seqan::_arrayCopyForwardDefault<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘seqan::arrayCopyForward<char*, char const*, char const*>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘seqan::_arrayConstructCopyPointer<char const, char>(char const*, char const*, char*, seqan::True)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘seqan::arrayConstructCopy<char const, char>(char const*, char const*, char*)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘seqan::AppendString_<seqan::Tag<seqan::TagGenerous_> >::append_<seqan::String<char, seqan::Alloc<void> >, char const>(seqan::String<char, seqan::Alloc<void> >&, char const&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘seqan::append<char, seqan::Alloc<void>, char, seqan::TagGenerous_>(seqan::String<char, seqan::Alloc<void> >&, char const&, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘seqan::append<seqan::String<char, seqan::Alloc<void> >, char>(seqan::String<char, seqan::Alloc<void> >&, char&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::_parse_readShape<std::basic_fstream<char, std::char_traits<char> >, char>(std::basic_fstream<char, std::char_traits<char> >&, char&, seqan::String<char, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:861:15,
    inlined from ‘seqan::parseGappedParams<std::basic_fstream<char, std::char_traits<char> >, seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, std::basic_fstream<char, std::char_traits<char> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1068:25,
    inlined from ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘memmove’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:76:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h: In function ‘seqan::chooseParams<seqan::RazerSSpec<false, false> >(seqan::RazerSOptions<seqan::RazerSSpec<false, false> >&, seqan::ParamChooserOptions&)bool’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp
[ 72%] Linking CXX executable ../../../bin/razers3
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target razers3
make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5Q_> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5Q_> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1302 |                                 assignSeq(store.contigStore[seqOfs + i].seq, multiSeqFile[i], contigFile.format);       // read Genome sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1323 |         return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1331 |         return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   114 |     if (!loadContigs(store, getArgumentValue(parser, 0)) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 74%] Linking CXX executable ../../../bin/razers3_simulate_reads
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Built target razers3_simulate_reads
make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; typename Size<T>::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   724 |             resize(seq, options.trimLength);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |     assignSeq(firstRead, multiFasta[0], format);            // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1415 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |         return appendRead(me, read, name, TReadStoreElement::INVALID_ID);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   727 |         appendRead(store, seq, seqId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1415 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |         return appendRead(me, read, name, TReadStoreElement::INVALID_ID);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   727 |         appendRead(store, seq, seqId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX executable ../../../bin/razers3_quality2prob
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3_quality2prob
make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; TSource = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1242:11:   required from ‘void seqan::assignValue(T&, TPos, const TValue&) [with T = String<GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>, Alloc<> >; TValue = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; TPos = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1242 |     assign(value(me, pos), _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_property.h:178:13:   required from ‘void seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String<GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   178 |         assignValue(pm, _getId(d), val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:191:23:   required from ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>& registerRead(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int; typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   191 |         assignProperty(me.vertexCargo, vd, new_cargo);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59:   required from ‘void construct(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, const seqan::String<seqan::Pair<TPosition, seqan::String<TString> > >&, const seqan::FragmentStore<TSpec, TConfig>&, TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    82 |                     TGraphCargo & new_cargo = registerRead(me, _readId(value(colIter)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                               ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:212:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   212 |     construct(rgraph, candidates, fragStore, options.contig);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>& GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>::operator=(const GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph.h:32,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:34:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note: because ‘GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>’ has user-provided ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::GraphCargo(const GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int]’
   44 |     GraphCargo(GraphCargo const& other)
      |     ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27:   required from ‘void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<long unsigned int, seqan::String<seqan::Triple<char, unsigned int, long unsigned int> > >; TScannerType = SimpleColumn]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   186 |             String<Dna5Q> ungapped_seq = fragStore.readSeqStore[iter_cr->readId];
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |                           ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   198 |     parseContig(fragStore, options.contig, candidates, algoSpec);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from ‘int seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |                                 appendRead(fragStore, seq, matePairId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   155 |     read(strmReads, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from ‘int seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |                                 appendRead(fragStore, seq, matePairId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   155 |     read(strmReads, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<char, unsigned int, long unsigned int>; TSource = Triple<char, unsigned int, long unsigned int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<char, unsigned int, long unsigned int>; TSource = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<char, unsigned int, long unsigned int>*; TSource1 = Triple<char, unsigned int, long unsigned int>*; TSource2 = Triple<char, unsigned int, long unsigned int>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<char, unsigned int, long unsigned int>*; TSource1 = Triple<char, unsigned int, long unsigned int>*; TSource2 = Triple<char, unsigned int, long unsigned int>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = Triple<char, unsigned int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::Triple<char, unsigned int, long unsigned int> >; TSource = const seqan::Triple<char, unsigned int, long unsigned int>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = Triple<char, unsigned int, long unsigned int>; TTargetSpec = Alloc<>; TSource = Triple<char, unsigned int, long unsigned int>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<Triple<char, unsigned int, long unsigned int> >; TSource = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:197:19:   required from ‘void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<long unsigned int, seqan::String<seqan::Triple<char, unsigned int, long unsigned int> > >; TScannerType = SimpleColumn]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             append(column, TAssignedReadChar(_sequenceCharacter(gapped_read[p - offset]), iter_cr->readId, _positionInRead(gapped_read[p - offset])));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |     parseContig(fragStore, options.contig, candidates, algoSpec);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<char, unsigned int, long unsigned int>& seqan::Triple<char, unsigned int, long unsigned int>::operator=(const seqan::Triple<char, unsigned int, long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<char, unsigned int, long unsigned int>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = char; T2 = unsigned int; T3 = long unsigned int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 77%] Linking CXX executable ../../../bin/rep_sep
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33,
    inlined from ‘registerRead’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:187:41,
    inlined from ‘construct’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘construct’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target rep_sep
make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o -MF CMakeFiles/search.dir/search.cpp.o.d -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   321 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   321 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   447 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   447 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   249 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   249 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >; TValue2 = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |     TDbQuerySSize dbQuerySize = length(value(dbFinder.query).text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, unsigned long, seqan::AllocateStorage_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<unsigned long, void, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<unsigned long, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<unsigned long, seqan::Alloc<void>, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<unsigned long, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<unsigned long, seqan::Alloc<void>, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<unsigned long, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<unsigned long, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<unsigned long, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<unsigned long, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type, unsigned long const&)seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45,
    inlined from ‘seqan::resize<unsigned long, seqan::Alloc<void>, unsigned long, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, unsigned long const&, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50,
    inlined from ‘seqan::resize<seqan::String<unsigned char, seqan::Alloc<void> >, void, unsigned long, seqan::TagGenerous_>(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:421:22,
    inlined from ‘seqan::resize<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, unsigned long>(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, unsigned long)seqan::Size<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 79%] Linking CXX executable ../../../bin/search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/search.dir/search.cpp.o -o ../../../bin/search  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target search
make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o -MF CMakeFiles/join.dir/join.cpp.o.d -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   316 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   328 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   350 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   362 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   316 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   328 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   350 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   362 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   231 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   231 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>; TValue2 = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |     TDbSSize dbQuerySize = length(value(dbFinder.query).text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                   ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, unsigned long, seqan::AllocateStorage_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<unsigned long, void, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<unsigned long, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<unsigned long, seqan::Alloc<void>, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<unsigned long, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<unsigned long, seqan::Alloc<void>, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<unsigned long, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<unsigned long, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<unsigned long, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<unsigned long, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long>(seqan::String<unsigned long, seqan::Alloc<void> >&, seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type, unsigned long const&)seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45,
    inlined from ‘seqan::resize<unsigned long, seqan::Alloc<void>, unsigned long, unsigned long, seqan::TagGenerous_>(seqan::String<unsigned long, seqan::Alloc<void> >&, unsigned long, unsigned long const&, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<unsigned long, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50,
    inlined from ‘seqan::resize<seqan::String<unsigned char, seqan::Alloc<void> >, void, unsigned long, seqan::TagGenerous_>(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:421:22,
    inlined from ‘seqan::resize<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >, unsigned long>(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&, unsigned long)seqan::Size<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > > >(seqan::StringSet<seqan::String<unsigned char, seqan::Alloc<void> >, seqan::Owner<seqan::ConcatDirect<void> > >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Preorder> > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, void, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >, unsigned long>(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::eraseBack<seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> > >(seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<void> >&)void’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned char, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3u, void>, seqan::Tuple<unsigned int, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2u, void>, seqan::Tuple<unsigned int, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24u, 8u> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 80%] Linking CXX executable ../../../bin/join
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘eraseBack’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target join
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -MF CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o.d -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/deque:67,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:322:22:   required from ‘void SEQAN_TEST_findAllExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   322 |     findAllExactIndex(res, readPieces, esaFinder, demultiplexStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:552:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   501 |     doAll(res, multiplex, barcodes, esaFinder, demultiplexStats, false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13:   required from ‘void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   177 |         Dna5String barcode = "ACTNG";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                    ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16:   required from ‘typename seqan::Suffix<const T>::Type seqan::suffix(const StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TPosition = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; typename Suffix<const T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   768 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25:   required from ‘seqan::Pair<typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator<TSA, TSpec>, TQuery&, typename Difference<T>::Type) [with TText = const StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSA = const String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSpec = SortedList; TQuery = const String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<TLeft, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*; typename Difference<T>::Type = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   803 |                         TSuffix         suf = suffix(text, *treeIter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                               ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23:   required from ‘seqan::Pair<typename seqan::Iterator<const TLimitsString, const seqan::Tag<seqan::Standard_> >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TQuery = String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<const TLimitsString, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |                 return _equalRangeSA(text, SearchTreeIterator<TSA const, SortedList>(sa), query);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1930 |                 finder.range = equalRangeSAIterator(indexText(index), indexSA(index), pattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   290 |                 int res = findExactIndex(readPieces[i], esaFinder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from ‘int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   653 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37:   required from ‘int seqan::readBatch(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&, unsigned int) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   819 |         res = seqIO._impl->readBatch(ids, seqs, num, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    72 |         if (readBatch(ids, seqs, seqStream, records) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from ‘int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   823 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35:   required from ‘int seqan::readAll(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   940 |         res = seqIO._impl->readAll(ids, seqs, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:13:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    90 |         if (readAll(bcids, bcs, bcStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<TFinder>::Type>::Type seqan::haystack(TObject&) [with TObject = Finder<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> > >; typename Parameter_<typename Haystack<TFinder>::Type>::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&; typename Haystack<TFinder>::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1165 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1928:40:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1928 |                 Index<TText, TSpec> &index = haystack(finder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   290 |                 int res = findExactIndex(readPieces[i], esaFinder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from ‘void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   355 |                         erase(seqs[i], 0 , len);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from ‘void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   344 |         clipBarcodes(seqs, matches, 6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from ‘void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   355 |                         erase(seqs[i], 0 , len);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from ‘void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   344 |         clipBarcodes(seqs, matches, 6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   501 |     doAll(res, multiplex, barcodes, esaFinder, demultiplexStats, false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:418:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   418 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h: In function ‘seqan::ClassTest::StaticData::_computePathToRoot()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘strncpy’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |                ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/s390x-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/deque:63:
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 7u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 82%] Linking CXX executable ../../../bin/test_sflex_demultiplex
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_demultiplex
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -MF CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o.d -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   150 |                 if (seqan::readRecord(id, seq, inStream) == 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from ‘unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   219 |         erase(seq, cut_pos, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |                         unsigned res = trimRead(seq, 20, m);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from ‘unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   219 |         erase(seq, cut_pos, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |                         unsigned res = trimRead(seq, 20, m);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h: In function ‘seqan::ClassTest::StaticData::_computePathToRoot()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘strncpy’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |                ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h: In function ‘SEQAN_TEST_cut_tail_test<true>()void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘strncpy’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |                ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h: In function ‘SEQAN_TEST_cut_bwa_test<true>()void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘strncpy’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
[ 83%] Linking CXX executable ../../../bin/test_sflex_trimming
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Built target test_sflex_trimming
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -MF CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o.d -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of ‘unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:224:29:   required from ‘void SEQAN_TEST_strip_pair_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   224 |         unsigned insert = stripPair(seq1,seq2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                           ~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:245:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >&)’ is deprecated [-Wdeprecated-copy]
  297 |         TAlign align = ret.i2;
      |                ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15:   required from ‘void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    59 |     TSequence seq1 = "AAAAAAAAA";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |               ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   538 |                 seqan::erase(seq, length(seq) - overlap, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   538 |                 seqan::erase(seq, length(seq) - overlap, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = String<SimpleType<unsigned char, Dna5Q_> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = String<SimpleType<unsigned char, Dna5Q_> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17:   required from ‘typename seqan::Source<seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> > >::Type& seqan::source(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; typename Source<Gaps<TSequence, Tag<ArrayGaps_> > >::Type = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |     return value(gaps._source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22:   required from ‘unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   230 |         return length(source(row1)) - countTotalGaps(row2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   533 |         int overlap = getOverlap(ret.i2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 85%] Linking CXX executable ../../../bin/test_sflex_adapter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Built target test_sflex_adapter
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -MF CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o.d -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from ‘void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   604 |                 erase(seqs[i], 0, head);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   446 |     preTrim(seqs2, ids2, 3, 3, 4, stats);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna_>*; TSource1 = SimpleType<unsigned char, Dna_>*; TSource2 = SimpleType<unsigned char, Dna_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from ‘void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   604 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   446 |     preTrim(seqs2, ids2, 3, 3, 4, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [31]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = char [31]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = char [31]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16:   required from ‘void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    59 |     appendValue(seqs, "ATGACTGTACACGTGATCGTACGTAGCAGC");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5Q_> >; TTargetSpec = Alloc<>; TValue = char [7]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = char [7]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TValue = char [7]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16:   required from ‘void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   335 |     appendValue(multiplex, "ACTGTA");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [11]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TString2 = char [11]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TValue = char [11]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   427 |     appendValue(seqs, "ACGTAACTGA");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 87%] Linking CXX executable ../../../bin/test_sflex_general_processing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_general_processing
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -MF CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o.d -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function ‘seqan::ArgumentParser initParser()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  610 |     std::auto_ptr<ArgumentParserBuilder> argParseBuilder;
      |          ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/test_system.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:71:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of ‘unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:411:12:   required from ‘unsigned int stripPairBatch(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TSeq>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TSeq>&, AdapterTrimmingStats&, bool) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:   411 |                 stripPair(read1, read2);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1926:27:   required from ‘void adapterTrimmingStage(AdapterTrimmingParams&, TSeqs&, TIds&, TSeqs&, TIds&, bool) [with TSeqs = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIds = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >]’
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:  1926 |             stripPairBatch(seqSet1[i], idSet1[i], seqSet2[i], idSet2[i], params.stats, tagOpt);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2726:37:   required from here
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:  2726 |                 adapterTrimmingStage(adapterTrimmingParams, seqSet1, idSet1, seqSet2, idSet2, tagOpt);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |                 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  297 |         TAlign align = ret.i2;
      |                ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from ‘int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   653 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37:   required from ‘int seqan::readBatch(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&, unsigned int) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   819 |         res = seqIO._impl->readBatch(ids, seqs, num, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1225 |     if (seqan::readBatch(ids, seqs, seqStream, records) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from ‘int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   823 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35:   required from ‘int seqan::readAll(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   940 |         res = seqIO._impl->readAll(ids, seqs, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1254 |     if (seqan::readAll(params.barcodeIds, params.barcodes, bcStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16:   required from ‘typename seqan::Suffix<const T>::Type seqan::suffix(const StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; typename Suffix<const T>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   768 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25:   required from ‘seqan::Pair<typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator<TSA, TSpec>, TQuery&, typename Difference<T>::Type) [with TText = const StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSA = const String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSpec = SortedList; TQuery = const String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<TLeft, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*; typename Difference<T>::Type = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   803 |                         TSuffix         suf = suffix(text, *treeIter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                               ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23:   required from ‘seqan::Pair<typename seqan::Iterator<const TLimitsString, const seqan::Tag<seqan::Standard_> >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TQuery = String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<const TLimitsString, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   897 |                 return _equalRangeSA(text, SearchTreeIterator<TSA const, SortedList>(sa), query);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1930 |                 finder.range = equalRangeSAIterator(indexText(index), indexSA(index), pattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from ‘void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from ‘void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1607 |                 preTrim(seqs, ids, demultiplexingParams.multiplex, processingParams.trimLeft,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1608 |                     processingParams.trimRight, processingParams.minLen, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2655 |                 preprocessingStage(seqSet[0], idSet[0], demultiplexingParams,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2656 |                     processingParams, parser, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from ‘void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   716 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from ‘void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1607 |                 preTrim(seqs, ids, demultiplexingParams.multiplex, processingParams.trimLeft,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1608 |                     processingParams.trimRight, processingParams.minLen, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2655 |                 preprocessingStage(seqSet[0], idSet[0], demultiplexingParams,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2656 |                     processingParams, parser, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54:
In function ‘snprintf’,
    inlined from ‘seqan::_assignTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 2 and 5 bytes into a destination of size 4
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 4u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 3u, void>, seqan::Tuple<unsigned long, 5u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2u, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Bundle2<seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Pool<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned long, seqan::Tuple<unsigned long, 2u, void>, seqan::Tuple<unsigned long, 2u, void>, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > > >, seqan::Merger3>::operator++() [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pool<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew3NComp<seqan::Pair<unsigned long, seqan::Tuple<unsigned long, 3u, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘seqan::allocate<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, unsigned long, seqan::AllocateStorage_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, void, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::pop<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >(seqan::PriorityType<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> > >, seqan::MergeStreamComparer<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> >, seqan::PriorityHeap>&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘seqan::Handler<seqan::Bundle2<seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>, seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Tag<seqan::ReadSorterSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >::pop()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >::operator++()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘seqan::append<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘seqan::assign<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘seqan::operator<< <seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > >, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > > >(seqan::Pool<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long>, unsigned long, seqan::File<seqan::Async<void> > > > >&, seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int>, unsigned long, seqan::File<seqan::Async<void> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7u, seqan::BitPacked<16u, 16u> >, seqan::Tag<seqan::Pack_> >, int> > >, seqan::Filter<seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> >, unsigned long, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> > > > >&)bool’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘seqan::Pipe<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >, seqan::Multi<seqan::Skew7, seqan::Pair<unsigned long, unsigned long, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned long, seqan::Alloc<void> > > >::process<seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> > >(seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<void> >, seqan::Owner<seqan::Tag<seqan::Default_> > > >, seqan::Source<void> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >&)bool [clone .isra.0]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 88%] Linking CXX static library libseqan_flexlib.a
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexlib.dir/link.txt --verbose=1
/usr/bin/ar qc libseqan_flexlib.a CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o
/usr/bin/ranlib libseqan_flexlib.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 90%] Linking CXX executable ../../../bin/sflexQC
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexQC.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexQC  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Built target sflexQC
make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 91%] Linking CXX executable ../../../bin/sflexAR
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexAR.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexAR  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Built target sflexAR
make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 93%] Linking CXX executable ../../../bin/sflexDMulti
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexDMulti.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target sflexDMulti
make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 95%] Linking CXX executable ../../../bin/sflexFilter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target sflexFilter
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -MF CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 96%] Linking CXX executable ../../../bin/seqan_flexbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘pop’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘insertStream’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘operator<<’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘process.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘pop’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘operator++’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘append’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘assign’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘assign.isra’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘assign.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Built target seqan_flexbar
make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 98%] Linking CXX executable ../../../bin/sgip
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:759:37,
    inlined from ‘_createUndir’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:430:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createUndir’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:760:23,
    inlined from ‘_createUndir’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:430:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createUndir’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toHtml’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In member function ‘_toHtml’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:759:37,
    inlined from ‘_createGraph.isra’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.h:99:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createGraph.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addVertex’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33,
    inlined from ‘_createVertices’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:760:23,
    inlined from ‘_createGraph.isra’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.h:99:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createGraph.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘obtainId’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘addEdge’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:617:19,
    inlined from ‘addEdges’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:764:10,
    inlined from ‘_createGraph.isra’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.h:99:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_createGraph.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Built target sgip
make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o -MF CMakeFiles/variant_comp.dir/variant_comp.cpp.o.d -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamPeek(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  169 |     if (c == EOF)
      |           ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function ‘int seqan::streamReadChar(char&, FILE*)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
  182 |     if (c == EOF)
      |           ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:238:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  238 | struct LessGPosSize : public ::std::binary_function < TIndel, TIndel, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:256:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 | struct LessGPos : public ::std::binary_function < TVariant, TVariant, bool >
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function ‘bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  278 |     if(options.genotypeAware && predIndel.genotype != refIndel.genotype)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  281 |         int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance);
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function ‘int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  477 |     for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  479 |         for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it)
      |         ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String<TCargo>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15:   required from ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, int>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:  1917 |         findIntervals(g, pm, act_knot, query_begin, query_end, result);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, TValue, String<TChar>&) [with TValue = int; TCargo = int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:  1898 |         findIntervals(tree.g,tree.pm,query_begin,query_end,result);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:582:17:   required from ‘int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&) [with TIndelSet = StringSet<IndelInfo>; TGenome = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TGenomeIDs = String<String<char, Alloc<> > >; TOptions = IndelCompareOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:   582 |                         findIntervals(itree,beginPoint,endPoint,intersectingIntervals);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:834:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:   834 |     int result = compareIndels(refIndels,predictedIndels,genomes,genomeIDs,options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1949 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1961 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1982 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:39:   required from ‘int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet<seqan::IndelInfo>; TSnpSet = seqan::StringSet<seqan::SnpInfo>; TGenomeMap = std::map<seqan::String<char, seqan::Alloc<> >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   444 |                 TIndel indel = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                     ^
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   815 |     if (readGFF(toCString(options.inputReference), refIndels, refSnps, gIdStringToIdNumMap, options) > 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘seqan::allocate<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long, seqan::AllocateStorage_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*&, unsigned long, seqan::Tag<seqan::AllocateStorage_> const&)void’,
    inlined from ‘seqan::_allocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘seqan::_reallocateStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Value<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, 0>::Type*’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘seqan::_reserveStorage<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘seqan::reserve<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘seqan::_Resize_String<seqan::Tag<seqan::TagGenerous_> >::resize_<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘seqan::resize<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void>, unsigned long, seqan::TagGenerous_>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long, seqan::Tag<seqan::TagGenerous_>)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘seqan::resize<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >, unsigned long>(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&, unsigned long)seqan::Size<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >::Type’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘seqan::eraseBack<seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> > >(seqan::String<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, seqan::Alloc<void> >&)void’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘seqan::_toText<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new(unsigned long)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[100%] Linking CXX executable ../../../bin/variant_comp
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp  -lrt 
In function ‘allocate’,
    inlined from ‘_allocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘_reallocateStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘_reserveStorage’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘reserve’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘resize_’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘resize’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘eraseBack’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘_toText’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                                   ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Nq3olQ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x
++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-1.4.2
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x 'INSTALL=/usr/bin/install -p' -C build/Release
make: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
/usr/bin/make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/dfi/CMakeFiles/dfi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Built target dfi
/usr/bin/make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/compute_gain.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Built target compute_gain
/usr/bin/make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Built target fiona
/usr/bin/make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona_illumina.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  6%] Built target fiona_illumina
/usr/bin/make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/mason/CMakeFiles/mason.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Built target mason
/usr/bin/make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  9%] Built target micro_razers
/usr/bin/make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Built target rabema_prepare_sam
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_build_gold_standard
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_evaluate
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_do_search
/usr/bin/make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
/usr/bin/make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 20%] Built target razers2
/usr/bin/make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Built target sak
/usr/bin/make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
/usr/bin/make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target samcat
/usr/bin/make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target seqan_tcoffee
/usr/bin/make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqcons
/usr/bin/make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target snp_store
/usr/bin/make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target splazers
/usr/bin/make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target stellar
/usr/bin/make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target tree_recon
/usr/bin/make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target seqan_extras
/usr/bin/make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target alf
/usr/bin/make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target breakpoint_calculator
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target bisar
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target casbar
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target four2three
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_bam_coverage
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_fastq_stats
/usr/bin/make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target gustaf
/usr/bin/make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target insegt
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target mason_sim
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_genome
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_methylation
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Built target mason_frag_sequencing
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_variator
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_materializer
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_simulator
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_splicing
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_tests
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target roi_plot_thumbnails
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target bam2roi
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Built target roi_feature_projection
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Built target param_chooser
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Built target test_funcs_param_chooser
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target razers3
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Built target razers3_simulate_reads
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3_quality2prob
/usr/bin/make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target rep_sep
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target search
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target join
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_demultiplex
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Built target test_sflex_trimming
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Built target test_sflex_adapter
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_general_processing
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Built target seqan_flexlib
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Built target sflexQC
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Built target sflexAR
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target sflexDMulti
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target sflexFilter
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Built target seqan_flexbar
/usr/bin/make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Built target sgip
/usr/bin/make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/dfi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/dfi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/dfi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/dfi/example/fasta1.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/dfi/example/fasta2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/fiona
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/compute_gain
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/fiona/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/fiona/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/fiona/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/mason
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/micro_razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/micro_razers/LICENSE
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Change Dir: '/builddir/build/BUILD/seqan-1.4.2/build/Release'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile sak_doc
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake "--color="
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/param_chooser/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/param_chooser/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/razers3
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers3/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers3/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers3/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers3/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers3/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/rep_sep
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/rep_sep/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/rep_sep/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/join
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/searchjoin/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/searchjoin/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/seqan_flexbar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/seqan_flexbar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/seqan_flexbar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/sgip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/iso_m2D_m196.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/iso_r01_m200.A00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/iso_r01_m200.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/iso_r01_m200.B00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/iso_r01_m200.B01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/latin-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/lattice-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip/example/sts-7
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/variant_comp
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/variant_comp/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/variant_comp/README
make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
+ mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/include/seqan
+ cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/include/seqan
+ cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/include/seqan
+ mkdir -p seqandoc
+ cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan/variant_comp seqandoc
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan
+ rm -f 'seqandoc/*.txt'
+ mv /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin/searchjoin
+ find /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/bin -type f -name '*.h' -exec chmod 0755 '{}' ';'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.4.2-54.fc40 --unique-debug-suffix -1.4.2-54.fc40.s390x --unique-debug-src-base seqan-1.4.2-54.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-1.4.2
find-debuginfo: starting
Extracting debug info from 43 files
DWARF-compressing 43 files
sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/seqan-1.4.2-54.fc40.s390x
24419 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: seqan-1.4.2-54.fc40.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.WuU3p3
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/README.rst /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Mfiu77
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(gnulib) seqan = 1.4.2-54.fc40 seqan(s390-64) = 1.4.2-54.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld64.so.1()(64bit) ld64.so.1(GLIBC_2.3)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.25)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.35)(64bit) libc.so.6(GLIBC_2.36)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libemon.so.1.3.1()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.4)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH)
Processing files: seqan-devel-1.4.2-54.fc40.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.KG4vTF
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan-devel
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/README.rst /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan-devel
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ksA1yh
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-devel
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-devel
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: seqan-devel = 1.4.2-54.fc40 seqan-devel(s390-64) = 1.4.2-54.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-doc-1.4.2-54.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.6boVvq
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/doc/seqan-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.VL0pU6
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-doc
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x/usr/share/licenses/seqan-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: seqan-doc = 1.4.2-54.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debugsource-1.4.2-54.fc40.s390x
Provides: seqan-debugsource = 1.4.2-54.fc40 seqan-debugsource(s390-64) = 1.4.2-54.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debuginfo-1.4.2-54.fc40.s390x
Provides: debuginfo(build-id) = 02b37914fb9f46e4d1f542f64e96668e145b457f debuginfo(build-id) = 0a7806a2c79acd5c0765d38f6502452254609d57 debuginfo(build-id) = 0d4b9de80cd822e61f2a2fe5551538efc01ff47f debuginfo(build-id) = 0f883e610f2f65d7e618930429eb17c146ffbbff debuginfo(build-id) = 14d6f9f037dc468ec7535667cda0c58da4273e84 debuginfo(build-id) = 1691cd1b7a20634260c7470f829c10303430754d debuginfo(build-id) = 1dc36e6c86a4d8d78e3c9b4587a42d50983d140d debuginfo(build-id) = 1f305704c505e8f6f3f3aebb0082b57e258b9ba2 debuginfo(build-id) = 21690881842d8e78eb6977f4a8b187b403f162b3 debuginfo(build-id) = 2788895cf097766349766e28cc9cf163cabc5cd6 debuginfo(build-id) = 287bbe1c5455e1fa4d942f99233963b280f70136 debuginfo(build-id) = 2b9ccbc8b3220602448ccf7b45d77e9ee0f78160 debuginfo(build-id) = 2beca81345446f80f8e93dc728100c9aa00249f2 debuginfo(build-id) = 2cae1f9efe50ddf8e13df6475d7b9dc9f3c91c74 debuginfo(build-id) = 2d656418b20dcd58508ffd515c34a5e2798928ad debuginfo(build-id) = 2e7497813c04553844d6ee50c9916b7575885bec debuginfo(build-id) = 3a2f243346f8e98aafdc6aaf591209c7b16382a5 debuginfo(build-id) = 3e17142544adc2199f9d0ea4c4480a5cee3f644e debuginfo(build-id) = 4f296f86f55928904fdd86e41010e0633cf200e3 debuginfo(build-id) = 5237006649d4db786bb68d31f50d62d801266a0b debuginfo(build-id) = 55df73363ae960791edf1906aa58bb7235376283 debuginfo(build-id) = 58610ca1a1eab918a32db94e0aa8c0e6dc35a6ab debuginfo(build-id) = 5fa66052708d5c6621e36c14ac132b55ed5e9f71 debuginfo(build-id) = 6e6cd9b957f966cfca715cd2e27150fbe697f701 debuginfo(build-id) = 745dad0275c57f0e3f18e7d00fa3d82de9816721 debuginfo(build-id) = 813b8b37d1cac493f4c31a4ad8ad52e89b44fd8d debuginfo(build-id) = 853e232364c7e536515cae21afd06c67cc294a4c debuginfo(build-id) = 91112ca1413286329a3973279ccae4f3a22a879f debuginfo(build-id) = 92d1cce63cc453e4680ca6f9cc86dab938e60e5d debuginfo(build-id) = 948ea84d4f653a6ae248fb44126fc1a025ab0a3a debuginfo(build-id) = 9ea1fe7bb6b01b4792a7d64d9366c0898ec3bc3e debuginfo(build-id) = aae8b50fb0bc9e156804fd856bde310bd2dea257 debuginfo(build-id) = aba13f28c30024d322178a5a2af7650bf6d2f39b debuginfo(build-id) = ac8272d29ce5f2054d72ba4241097d4fdb31a91c debuginfo(build-id) = aeb10655e934cc5b393c99542a6ddd3801923a1d debuginfo(build-id) = b378deed695637ba2ab4e5ae7a9b40c82e810a11 debuginfo(build-id) = b71316dd677ad7df3493c8bb02a892591650d27c debuginfo(build-id) = c45ec2b3b78a20fa801132c1cb8b288056b7e9db debuginfo(build-id) = d2761aaf16309eae99f79c78948a7120b729c877 debuginfo(build-id) = d4f149cf7975372335cd1828300f4c3d819f30fc debuginfo(build-id) = e3d6a1c47c0a6decadb89ae2f15c4b5af8d55cd6 debuginfo(build-id) = eb2baf7d04b4dfd236ec399f4f44137c793a57b5 debuginfo(build-id) = ecd4431dc5689829f96a25f74593bfa25b55a83c seqan-debuginfo = 1.4.2-54.fc40 seqan-debuginfo(s390-64) = 1.4.2-54.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seqan-debugsource(s390-64) = 1.4.2-54.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x
Wrote: /builddir/build/RPMS/seqan-1.4.2-54.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-54.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-54.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-54.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-54.fc40.s390x.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.cQ5qW2
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-54.fc40.s390x
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.WgxHb6
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ rm -rf seqan-1.4.2 seqan-1.4.2.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild seqan-1.4.2-54.fc40.src.rpm
Finish: build phase for seqan-1.4.2-54.fc40.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1707147948.598533/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/seqan-1.4.2-54.fc40.src.rpm) Config(child) 48 minutes 30 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "seqan",
            "epoch": null,
            "version": "1.4.2",
            "release": "54.fc40",
            "arch": "src"
        },
        {
            "name": "seqan-doc",
            "epoch": null,
            "version": "1.4.2",
            "release": "54.fc40",
            "arch": "noarch"
        },
        {
            "name": "seqan",
            "epoch": null,
            "version": "1.4.2",
            "release": "54.fc40",
            "arch": "s390x"
        },
        {
            "name": "seqan-debuginfo",
            "epoch": null,
            "version": "1.4.2",
            "release": "54.fc40",
            "arch": "s390x"
        },
        {
            "name": "seqan-debugsource",
            "epoch": null,
            "version": "1.4.2",
            "release": "54.fc40",
            "arch": "s390x"
        },
        {
            "name": "seqan-devel",
            "epoch": null,
            "version": "1.4.2",
            "release": "54.fc40",
            "arch": "s390x"
        }
    ]
}
RPMResults finished